View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15019_low_8 (Length: 223)
Name: NF15019_low_8
Description: NF15019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15019_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 12750694 - 12750887
Alignment:
| Q |
18 |
acaaagagtgacaatctgttccacaaccaaccgtctcagaggacaacccattacaattttcttgtgtggcacaacctgcattgcaataataatcacacaa |
117 |
Q |
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| T |
12750694 |
acaaagagtgacaatctgttccacaaccaaccgtctcacaggacaacccattacaattttcttgtgtggcacaacctgcattgcaataataatcacacaa |
12750793 |
T |
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| Q |
118 |
ggaagtttactaatgtgatatgattgtaaatggtaatggtaagtttaaaatgtgatagcaaagtgttaagtttatttaatatgccatattttct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12750794 |
ggaagtttactaatgtgatatgattgtaaatggtaatggtaagtttaaaatgtgatagcaaagtgttaagtttatttaatatgccatattttct |
12750887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 12813658 - 12813851
Alignment:
| Q |
18 |
acaaagagtgacaatctgttccacaaccaaccgtctcagaggacaacccattacaattttcttgtgtggcacaacctgcattgcaataataatcacacaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813658 |
acaaagagtgacaatctgttccacaaccaaccgtctcacaggacaacccattacaattttcttgtgtggcacaacctgcattgcaataataatcacacaa |
12813757 |
T |
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| Q |
118 |
ggaagtttactaatgtgatatgattgtaaatggtaatggtaagtttaaaatgtgatagcaaagtgttaagtttatttaatatgccatattttct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813758 |
ggaagtttactaatgtgatatgattgtaaatggtaatggtaagtttaaaatgtgatagcaaagtgttaagtttatttaatatgccatattttct |
12813851 |
T |
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