View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1501_low_1 (Length: 767)
Name: NF1501_low_1
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 606; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 10 - 752
Target Start/End: Complemental strand, 4863815 - 4863076
Alignment:
| Q |
10 |
attattctcacaattttttaaccaataaattattcttacactagaaatttatattttctcaattgacaatgggaatttagggtttgtattcnnnnnnnnn |
109 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863815 |
attattctcacaaatttttaaccaataaattattcttactctagaaatttatattttctcaattgacaatgggaatttagggtttgtattccttttgttt |
4863716 |
T |
|
| Q |
110 |
nnnaaataaaattttagggtttgtattctgcttctagggttttctatactccaatatctgtgtatctccatatatatggcnnnnnnnnttaccctcaagt |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
4863715 |
tttaaataaaattttagggtttgtattctgcttctagggttttctatactccaatatctgtgtatctccatat----ggcaaaaaaaattaccctcaagt |
4863620 |
T |
|
| Q |
210 |
ttnnnnnnncggcttcaaaattttcaaccataccttatcttgatcctgatataacttaattaaattcaagctaattgcatttaaattcaaactaattaag |
309 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863619 |
ttaaaaaaacggcttcaaaattttcaaccataccttatcttgatcctgatataacttaattaaattcaagctaattgcatttaaattcaaactaattaag |
4863520 |
T |
|
| Q |
310 |
gcatacaaatattaattaatttgatnnnnnnnntt-accatgaatctcaagaagctaattggttgaaagacttagaagtagtattatgagtgcccttaag |
408 |
Q |
| |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863519 |
gcatacaaatattaattaatttgataaaaaaaatttaccatgaatctcaagaagctaattggttgaaagacttagaagtagtattatgagtgcccttaag |
4863420 |
T |
|
| Q |
409 |
ttgactcctcttcttctttttctttgtgtaagggatccctctagcctttgattgacactccttaacttcacgaaggtaaacacgaatagctccggttcca |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863419 |
ttgactcctcttcttctttttctttgtgtaagggatccctctagcctttgattgacactccttaacttcacgaaggtaaacacgaatagctccggttcca |
4863320 |
T |
|
| Q |
509 |
aacggattattctccggcgatccaccgtgttcttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtctcaacggacaag |
608 |
Q |
| |
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| T |
4863319 |
aacggattattctccggcgatccaccgtgttcttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtctcaacggacaag |
4863220 |
T |
|
| Q |
609 |
tacacggtgccggcggatcgggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaactcaagcac |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863219 |
tacacggtgccggcggatcgggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaactcaagcac |
4863120 |
T |
|
| Q |
709 |
atggttgaagttgcactgagacaaagaaactggtggtgattggt |
752 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4863119 |
atggttgaagttgcactgagacaaagaaactggtggtgattggt |
4863076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 420 - 729
Target Start/End: Complemental strand, 39556753 - 39556444
Alignment:
| Q |
420 |
tcttctttttctttgtgtaagggatccctctagcctttgattgacactccttaacttcacgaaggtaaacacgaatagctccggttccaaacggattatt |
519 |
Q |
| |
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||||||||||||| |||||||||| || |||||||| | |||||||||| |||| || | ||| ||||| |||||||| ||| | | || |||||| | |
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| T |
39556753 |
tcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccgctcgcgaaaggattagt |
39556654 |
T |
|
| Q |
520 |
ctccggcgatccaccgtgttcttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtctcaacggacaagtacacggtgcc |
619 |
Q |
| |
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||| || | ||| |||| ||| ||||||||||| |||| || || || || ||||||||||| |||||||||||||| | ||||| ||||| ||||| |
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| T |
39556653 |
ctctggagttccgccgttttcctcataagcagcccttaacctcccaattagagcatcaagacttccccaagcttgtctaagtggacatgtacaaggtgct |
39556554 |
T |
|
| Q |
620 |
ggcggatcgggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaactcaagcacatggttgaagt |
719 |
Q |
| |
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|| || || || ||||| |||| || ||||| || || ||||| || || ||||||||||||||||| || | ||| || || | |||||||||| | | |
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| T |
39556553 |
ggtggctctggctgtccataaaacatacaaccttgtaaatgaactttggtttttccaaattgatctaaatacctaagaaattccaacacatggttggaat |
39556454 |
T |
|
| Q |
720 |
tgcactgaga |
729 |
Q |
| |
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|||| ||||| |
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| T |
39556453 |
tgcagtgaga |
39556444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 528 - 714
Target Start/End: Original strand, 32002112 - 32002298
Alignment:
| Q |
528 |
atccaccgtgttcttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtctcaacggacaagtacacggtgccggcggatc |
627 |
Q |
| |
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||||||| | |||||||||||||||||||| | ||| || |||||||||||||| |||||||||||| | | ||||||||||| ||| | || || || |
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| T |
32002112 |
atccaccattttcttcataagcagctcttaatcttccaattagtgcatcaagacttccccaagcttgttttagaggacaagtacatggtccaggtggttc |
32002211 |
T |
|
| Q |
628 |
gggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaactcaagcacatggtt |
714 |
Q |
| |
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|| |||||||||||| | ||||| || ||||| || || || |||||||||||||| ||||| | ||||| ||||| |||||||| |
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| T |
32002212 |
ggtttgtccgaaaaacaaacaaccttgtaagtgcacttttgtttttccaaattgatccaagtaccttaggaattcaagaacatggtt |
32002298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 440 - 720
Target Start/End: Complemental strand, 35814844 - 35814564
Alignment:
| Q |
440 |
gggatccctctagcctttgattgacactccttaacttcacgaaggtaaacacgaatagctccggttccaaacggattattctccggcgatccaccgtgtt |
539 |
Q |
| |
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||||||||||| |||||| |||| ||||| || |||||||||||||| ||||||||||| |||| || ||| |||||| |||||||||| | |
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| T |
35814844 |
gggatccctcttgccttttgctgactatccttcacctcacgaaggtaaacccgaatagctcctccggcaaaggggttagtctccgatgatccaccgttct |
35814745 |
T |
|
| Q |
540 |
cttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtctcaacggacaagtacacggtgccggcggatcgggttgtccgaa |
639 |
Q |
| |
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|||| || ||||||| || ||||||||||||||||||||||| ||||||||||| | | ||||||| ||| ||||| || || |||||||| || |
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| T |
35814744 |
cttcgtaggcagctcgaaggcgtccgatgagtgcatcaagacttccccaagcttgcttgagaggacaagcacaaggtgcaggtggggtaggttgtccaaa |
35814645 |
T |
|
| Q |
640 |
aaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaactcaagcacatggttgaagtt |
720 |
Q |
| |
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||||||||||| || ||||||||||||||||| ||||||||||| | ||||||||| || ||||| |||||||||||||| |
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|
| T |
35814644 |
gaagatgcaaccttgaaagtgaaccttagtcttaccaaattgatcaaggtaacgaagaaaatcaagaacatggttgaagtt |
35814564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 538 - 699
Target Start/End: Complemental strand, 30942124 - 30941963
Alignment:
| Q |
538 |
ttcttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtctcaacggacaagtacacggtgccggcggatcgggttgtccg |
637 |
Q |
| |
|
||||||||||||||| |||| | ||| || || ||||| | || |||||||||||||| | ||||||||||| ||||| || || || |||||||| |
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| T |
30942124 |
ttcttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaagtacaaggtgcaggtggttctggttgtcca |
30942025 |
T |
|
| Q |
638 |
aaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaa |
699 |
Q |
| |
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|||| || ||||| || | ||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
30942024 |
taaaacatacaaccttgtacatgaaccttagtttttccaaattggtctaagtaacgaaggaa |
30941963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 538 - 596
Target Start/End: Original strand, 33672055 - 33672113
Alignment:
| Q |
538 |
ttcttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtc |
596 |
Q |
| |
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||||||| ||||||||||||| | ||| || | |||||||||||| ||||||||||||| |
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|
| T |
33672055 |
ttcttcaaaagcagctcttagtcttccaatcaatgcatcaagacttccccaagcttgtc |
33672113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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