View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1501_low_10 (Length: 337)
Name: NF1501_low_10
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 327
Target Start/End: Complemental strand, 8505290 - 8504970
Alignment:
| Q |
7 |
ctatccatctccttaacagtcttcatcttgttattcaatatcaataaggtgaactcaacagaactcacttcttttaccatcacaaagtttagccaagacc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8505290 |
ctatccatctccttaacagtcttcatcttgttattcaatatcaataaggtgaactcaacagaactcacttcttttaccatcacaaagtttagccaagacc |
8505191 |
T |
|
| Q |
107 |
aaaagaatctaatcttccaaggcaatgccataactacctcgacagggaagttacaacttaccaaggcagtcaagaactctattggcagagctctatattc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8505190 |
aaaagaatctaatcttccaaggcaatgccataactacctcgacagggaagttacaacttaccaaggcagtcaagaactctattggcagagctctatattc |
8505091 |
T |
|
| Q |
207 |
tgctcctattcatatttgggatagcaaaacaggagacgtggctaacttcgaaactctcttcacttttgctataactgctccttatagtagcaatgttgcc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8505090 |
tgctcctattcatatttgggatagcaaaacaggagacgtggctaacttcgaaacactcttcacttttgccataactgctccttatagtagcaatgttgcc |
8504991 |
T |
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| Q |
307 |
gacggtttggccttcttcatt |
327 |
Q |
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||||||||||||||||||||| |
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| T |
8504990 |
gacggtttggccttcttcatt |
8504970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 25370639 - 25370864
Alignment:
| Q |
7 |
ctatccatctccttaacagtcttcatcttgttattcaatatcaataaggtgaactcaacagaactcacttcttttaccatcacaaagtttagccaagacc |
106 |
Q |
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| T |
25370639 |
ctatccatctccttaacattcttcatcttgctactgaaca------aggtgaattcagcagaaacaacttccttttccatcacaaaatttgtcccagatc |
25370732 |
T |
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| Q |
107 |
aaaagaatctaatcttccaaggcaatgccataactacctcgacagggaagttacaacttaccaaggcagtcaagaactctattggcagagctctatattc |
206 |
Q |
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|||||||||| |||||||||||| |||| | |||| |||| |||||||||||| |||| ||||||||||||||||||||||||| |||||||| ||||| |
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| T |
25370733 |
aaaagaatctcatcttccaaggcgatgcgaaaactgcctcaacagggaagttagaactctccaaggcagtcaagaactctattggtagagctctttattc |
25370832 |
T |
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| Q |
207 |
tgctcctatt--catatttgggatagcaaaac |
236 |
Q |
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|| |||||| || ||||||||||||||||| |
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| T |
25370833 |
cgcccctattcacacatttgggatagcaaaac |
25370864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 8089045 - 8088972
Alignment:
| Q |
55 |
gtgaactcaacagaactcacttcttttaccatcacaaagtttagccaagaccaaaagaatctaatcttccaagg |
128 |
Q |
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|||||||||| |||| ||||||| ||| |||| | | ||||| |||||| ||||| ||||||||||||||||| |
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| T |
8089045 |
gtgaactcaatagaattcacttcctttgccataatagagttttcccaagatcaaaacaatctaatcttccaagg |
8088972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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