View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1501_low_11 (Length: 324)
Name: NF1501_low_11
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 32371690 - 32371530
Alignment:
| Q |
18 |
agttatgcctttgaaagcataagacctaacattttttgatgcataaaaggccagtcaatttgtgtaaagagtacctcacaaactagattcnnnnnnnnnn |
117 |
Q |
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| T |
32371690 |
agttatgcctttgaaagcataaaagctaacattttt-gatgcataaaaggccagtcaatttgtgtaaagagtacctcacaaactagatt----ttttttt |
32371596 |
T |
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| Q |
118 |
nccttctagtgaacgatattatccagcttctagtgattgataatcacaatcttagtctctagacat |
183 |
Q |
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| T |
32371595 |
tccttctagtgatcgatattatccagcttctagtgatcgataatcacaatcttagtctcttgacat |
32371530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 133 - 278
Target Start/End: Complemental strand, 32357192 - 32357047
Alignment:
| Q |
133 |
atattatccagcttctagtgattgataatcacaatcttagtctctagacatgttttggaggaa-aaaataagctgacccactcaaggctatttgacataa |
231 |
Q |
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| T |
32357192 |
atattatccagcttctagtgatagatagtcacaatcttagtttctagacatgttttggaggaaaaaaataacctga-ccactcaaggttatttgacatca |
32357094 |
T |
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| Q |
232 |
taaattgagaatattaaacaatctcacaatgttacaacacttccttt |
278 |
Q |
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| T |
32357093 |
taaattgtgaatattgaaccatctcacaatgttacaacacttccttt |
32357047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 32371536 - 32371439
Alignment:
| Q |
223 |
ttgacataataaattgagaatattaaacaatctcacaatgttacaacacttcctttc------gagcctcactataatactaaggttgttgccttctg |
314 |
Q |
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| T |
32371536 |
ttgacataataaattgtgaatattaaacaatctcacaatgttacaacacttcctttcgagggagagcctcagtataatactaaggttgttgccttctg |
32371439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 32365152 - 32365224
Alignment:
| Q |
26 |
ctttgaaagcataagacctaacattttttgatgcataaaaggccagtcaatttgtgtaaagagtacctcacaa |
98 |
Q |
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| T |
32365152 |
ctttgaaagcataaaaggtaacattttttaatgcataaaaggccagtcaatttgtgtaaagagtgcctcacaa |
32365224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 32364860 - 32364939
Alignment:
| Q |
142 |
agcttctagtgattgataatcacaatcttagtctctagacatgttttggaggaaaaaataagctgacccactcaaggctatt |
223 |
Q |
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| T |
32364860 |
agcttctagtgatagatagttagaatcttaatttctagac--gttttggaggaaaaaataacctgacccactcaaggttatt |
32364939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 32357382 - 32357335
Alignment:
| Q |
56 |
atgcataaaaggccagtcaatttgtgtaaagagtacctcacaaactag |
103 |
Q |
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| T |
32357382 |
atgcataaaaggccagtcagttggtgtaaagaatacttcacaaactag |
32357335 |
T |
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