View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1501_low_12 (Length: 297)
Name: NF1501_low_12
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 49518026 - 49518287
Alignment:
| Q |
18 |
ttaagaagaggaagaaagcacaaatgagtaaaaatgacaaagatcataataacctccaacacatggatatggttgctgttgacaaagcaagcaaagaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49518026 |
ttaagaagaggaagaaagcacaaatgagtaaaaatgacaaagatcataataacctccaacacatggatatggttgctgttgacaaagc------------ |
49518113 |
T |
|
| Q |
118 |
gcttgaactattgcttgctgatgacaaggggatagaaactggtctcaagggatataatctaaaatttnnnnnnnggaaggacaaaatggggaaggagaat |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49518114 |
--ttgaactattgcttcctgatgacaaggggatagaaactggtctcaagggatataatctaaaatttaaaaaaaggaaggacaaaatggggaaggagaat |
49518211 |
T |
|
| Q |
218 |
gttattattgatgagggtaaagtaccaaacagtacatatagtgatgatcaacgttttgttgcacttcttctctctc |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49518212 |
gttattattgatgagggtaaagtaccaaacagtacatatagtgatgatcaacgttttgttgcacttcttttctctc |
49518287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 80 - 275
Target Start/End: Original strand, 27747445 - 27747640
Alignment:
| Q |
80 |
atggatatggttgctgttgacaaagcaagcaaagaagagcttgaactattgcttgctgatgacaaggggatagaaactggtctcaagggatataatctaa |
179 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||| ||||||| ||||| |
|
|
| T |
27747445 |
atggatatagttgctgttgacaaagcaagcaaagaagagcttgagttattgcttgctgatgacaaggcgacagaaactggtctcaaaggatatagtctaa |
27747544 |
T |
|
| Q |
180 |
aatttnnnnnnnggaaggacaaaatggggaaggagaatgttattattgatgagggtaaagtaccaaacagtacatatagtgatgatcaacgttttg |
275 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
27747545 |
aatttaaaaaaaggaaggacaaaatgggaaaggagaatgttattattgatgagggtaaagttccaaacagtacatatagtgatgatccacgttttg |
27747640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 38527452 - 38527375
Alignment:
| Q |
100 |
caaagcaagcaaagaagagcttgaactattgcttgctgatgacaaggggatagaaactggtctcaagggatataatct |
177 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
38527452 |
caaagcaagcaaagaagagcttgaactgttgcttgctgatgacaaggggacaggtactggtctcaagggatataatct |
38527375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University