View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1501_low_14 (Length: 294)
Name: NF1501_low_14
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 3 - 278
Target Start/End: Original strand, 16461700 - 16461975
Alignment:
| Q |
3 |
tggattttgacaaaaatcttatcgattttataatctatttaaaattaaaatttcttaaaacaactgcagaaaattgataggagcaagatactataataaa |
102 |
Q |
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| T |
16461700 |
tggattttgacaaaattcgcatcgattttatgttctatttaaaattaaaatttcttaaaacaactgcagaaaattgataggagcaagatactataataaa |
16461799 |
T |
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| Q |
103 |
aaagatcccaaaggttccccaagagattttaatggacatgggactcacactgcatcaacagcagctggtgtcattgttaacaatgctagttactatggtt |
202 |
Q |
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| T |
16461800 |
aaagatcccaaaggttccccaagagattttaatggacatgggactcacactgcatcaacagcagctggtgtcattgttaacaatgctagttactatggtt |
16461899 |
T |
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| Q |
203 |
tagcaaaaggaacagcaagaggtggttcaccttctgctaggattgctgcctataaagcatgctcaggagaaggttg |
278 |
Q |
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| T |
16461900 |
tagcaaaaggaacagcaagaggtggttcaccttctgctaggattgctgcctataaagcatgctcaggagaaggttg |
16461975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 110 - 279
Target Start/End: Original strand, 16491713 - 16491882
Alignment:
| Q |
110 |
ccaaaggttccccaagagattttaatggacatgggactcacactgcatcaacagcagctggtgtcattgttaacaatgctagttactatggtttagcaaa |
209 |
Q |
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| T |
16491713 |
ccaaaggttcaccaagagatactgttggacatggaactcacactgcatcaacagcagctggtgtcaatgttaataatgcaaattattatggtttagcaaa |
16491812 |
T |
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| Q |
210 |
aggaacagcaagaggtggttcaccttctgctaggattgctgcctataaagcatgctcaggagaaggttgt |
279 |
Q |
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| T |
16491813 |
aggaacagcaagaggtggttcaccttcaactaggattgccgcctataaaacatgttcagaagaaggttgt |
16491882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 8957197 - 8957233
Alignment:
| Q |
134 |
atggacatgggactcacactgcatcaacagcagctgg |
170 |
Q |
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|||| ||||||||||||||| |||||||||||||||| |
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| T |
8957197 |
atggtcatgggactcacacttcatcaacagcagctgg |
8957233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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