View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1501_low_15 (Length: 294)
Name: NF1501_low_15
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 33342815 - 33343081
Alignment:
| Q |
13 |
aaaatccacggcacaggaagatggaaatagatatttgcattgttaaggctgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgcttt |
112 |
Q |
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| T |
33342815 |
aaaatccgcggcacaggaagatggaaatagatatttgcattgttaagactgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgcttt |
33342914 |
T |
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| Q |
113 |
attactagttgataaacttaattattggccaaaagaggtttcaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaacca |
212 |
Q |
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| T |
33342915 |
attactagtcgataaacttaattattggccaaaagaggtttcaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaacca |
33343014 |
T |
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| Q |
213 |
aataggtatggatcatggggaatctgctttacatatgggacatggtttggaataaaagggttgatag |
279 |
Q |
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| T |
33343015 |
aataggtatggatcatggggaatctgctttacatatgggacatggtttggaataaaagggttgatag |
33343081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 35124097 - 35123831
Alignment:
| Q |
13 |
aaaatccacggcacaggaagatggaaatagatatttgcattgttaaggctgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgcttt |
112 |
Q |
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| T |
35124097 |
aaaatccgcggcacaggaagatggaaatagatatttgcattgttaagactgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgcttt |
35123998 |
T |
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| Q |
113 |
attactagttgataaacttaattattggccaaaagaggtttcaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaacca |
212 |
Q |
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| T |
35123997 |
attactagtcgataaacttaattattggccaaaagaggtttaaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaacca |
35123898 |
T |
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| Q |
213 |
aataggtatggatcatggggaatctgctttacatatgggacatggtttggaataaaagggttgatag |
279 |
Q |
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| T |
35123897 |
aataggtatggatcatggggaatctgctttacatatgggacatggtttggaataaaagggttgatag |
35123831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 24 - 272
Target Start/End: Original strand, 22507845 - 22508094
Alignment:
| Q |
24 |
cacaggaagatggaaatagatatttgcattgttaaggctgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgcttta--ttactagt |
121 |
Q |
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| T |
22507845 |
cacaggaggatggaaatagagacttgcattgctaaagccgcaaaatatattgaaagcatacaatctgatgatggttcatggtttggttttctttacttgt |
22507944 |
T |
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| Q |
122 |
tgataaacttaattattggccaaaagaggtttcaaaaatgatattaattaatttcttaatatgagtttaaagaatt---ataattacttaaccaaatagg |
218 |
Q |
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| T |
22507945 |
ccacaaacttaattatgcaacaaaagggatttcaaaaat--tatt--ttaattttataatgtgagtttaaacatttgtaataattcattaacgaactagg |
22508040 |
T |
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| Q |
219 |
tatggatcatggggaatctgctttacatatgggacatggtttggaataaaaggg |
272 |
Q |
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| T |
22508041 |
tacggatcatggggaatttgctttacatatgggacatggtttggaataaaaggg |
22508094 |
T |
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