View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1501_low_16 (Length: 261)

Name: NF1501_low_16
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1501_low_16
NF1501_low_16
[»] chr3 (5 HSPs)
chr3 (9-244)||(9996271-9996506)
chr3 (9-244)||(10217288-10217524)
chr3 (9-66)||(10227029-10227086)
chr3 (153-218)||(10377630-10377695)
chr3 (153-195)||(10658567-10658609)
[»] chr5 (5 HSPs)
chr5 (9-244)||(26796759-26796995)
chr5 (9-66)||(26800406-26800463)
chr5 (9-66)||(26807956-26808013)
chr5 (9-66)||(26815346-26815403)
chr5 (9-66)||(26822983-26823040)
[»] chr4 (1 HSPs)
chr4 (153-243)||(25793934-25794024)
[»] chr8 (1 HSPs)
chr8 (183-243)||(11488825-11488888)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 9996506 - 9996271
Alignment:
Q  9 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaaaggttcaaccatcagtgccaattgcagtttggctaacaactt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9996506 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaaaggttcaaccatcagtgccaattgcagtttggctaacaactt 9996407  T
Q  109 tcatttcttcaaatacagatcgagtaactaattaagtcttctcttgtggcaatgacaaccatttcactcctctcaaacatttttacaggaagaatcatta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9996406 tcatttcttcaaatacagatcgagtaactaattaagtcttctcttgtggcaatgacaaccatttcactcctctcaaacatttttacaggaagaatcatta 9996307  T
Q  209 caataacatggtccacttttgttttcaattcatcac 244  Q
    ||||||||||||||||||||||||||||||||||||    
T  9996306 caataacatggtccacttttgttttcaattcatcac 9996271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 10217524 - 10217288
Alignment:
Q  9 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaaaggttcaaccatcagtgccaattgcagtttggctaacaactt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10217524 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaaaggttcaaccatcagtgccaattgcagtttggctaacaactt 10217425  T
Q  109 tcatttcttcaaatacagatcgagt-aactaattaagtcttctcttgtggcaatgacaaccatttcactcctctcaaacatttttacaggaagaatcatt 207  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10217424 tcatttcttcaaatacagatcgagtaaactaagtaagtcttctcttgtggcaatgacaaccatttcattcctctcaaacatttttacaggaagaatcatt 10217325  T
Q  208 acaataacatggtccacttttgttttcaattcatcac 244  Q
    ||||||||||| |||||||||||||||||||||||||    
T  10217324 acaataacatgctccacttttgttttcaattcatcac 10217288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 10227086 - 10227029
Alignment:
Q  9 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10227086 atgaagattaaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 10227029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 10377630 - 10377695
Alignment:
Q  153 tgtggcaatgacaaccatttcactcctctcaaacatttttacaggaagaatcattacaataacatg 218  Q
    ||||||||||||  || |||  ||||||||||| ||||||||| ||||||||||||||||||||||    
T  10377630 tgtggcaatgacggccgttttgctcctctcaaatatttttacaagaagaatcattacaataacatg 10377695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 10658609 - 10658567
Alignment:
Q  153 tgtggcaatgacaaccatttcactcctctcaaacatttttaca 195  Q
    ||||||| ||||||||||||  |||||||||||||||||||||    
T  10658609 tgtggcagtgacaaccattttgctcctctcaaacatttttaca 10658567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 26796995 - 26796759
Alignment:
Q  9 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaaaggttcaaccatcagtgccaattgcagtttggctaacaactt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26796995 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaaaggttcaaccatcagtgccaattgcagtttggctaacaactt 26796896  T
Q  109 tcatttcttcaaatacagatcgagt-aactaattaagtcttctcttgtggcaatgacaaccatttcactcctctcaaacatttttacaggaagaatcatt 207  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26796895 tcatttcttcaaatacagatcgagtaaactaagtaagtcttctcttgtggcaatgacaaccatttcattcctctcaaacatttttacaggaagaatcatt 26796796  T
Q  208 acaataacatggtccacttttgttttcaattcatcac 244  Q
    ||||||||||| |||||||||||||||||||||||||    
T  26796795 acaataacatgctccacttttgttttcaattcatcac 26796759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 26800463 - 26800406
Alignment:
Q  9 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26800463 atgaagattaaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 26800406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 26808013 - 26807956
Alignment:
Q  9 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26808013 atgaagattaaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 26807956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 26815403 - 26815346
Alignment:
Q  9 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26815403 atgaagattaaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 26815346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 26823040 - 26822983
Alignment:
Q  9 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26823040 atgaagattaaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 26822983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 25794024 - 25793934
Alignment:
Q  153 tgtggcaatgacaaccatttcactcctctcaaacatttttacaggaagaatcattacaataacatggtccacttttgttttcaattcatca 243  Q
    ||||||||| ||||||| ||  ||||||||||||||||||||| ||||||||||||||||||||||  | ||||||||||||| |||||||    
T  25794024 tgtggcaattacaaccaatttgctcctctcaaacatttttacaagaagaatcattacaataacatgccctacttttgttttcagttcatca 25793934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 11488888 - 11488825
Alignment:
Q  183 aaacatttttacaggaagaatcattacaa---taacatggtccacttttgttttcaattcatca 243  Q
    ||||||||||||| |||||||||| | ||   ||||||| ||||||||||| ||||||||||||    
T  11488888 aaacatttttacaagaagaatcatgataaaaataacatgctccacttttgtcttcaattcatca 11488825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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