View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1501_low_18 (Length: 250)
Name: NF1501_low_18
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31737443 - 31737203
Alignment:
| Q |
1 |
cgctctacaaagaatataataat---tccccaaaaatttaactactactctagacaaaatttatgataatctctttcctttcaacaaagctactttcacc |
97 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31737443 |
cgctctacaaagaatataataataattccacaaaaatttaactactactctaggcaaaatttatgataatctctttcctttcaacaaagctactttcacc |
31737344 |
T |
|
| Q |
98 |
ttcttttcctgattcattcacattgtagaagcagaggtgataccaaatttatcagagtatttagttcgtgataataatggtgaaacaacttccatttgat |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31737343 |
ttcttttcctgattcattcacattgtagaagcagaggtgataccaaatttatcagagtatttagttcgtgataataatggtgaaacaactgccatttgat |
31737244 |
T |
|
| Q |
198 |
gaagaaactcaacatcatgaaccaatggattctctgttctg |
238 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
31737243 |
gaagaaactcaacatcatgaaccaaaggattctcagttctg |
31737203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31703082 - 31702846
Alignment:
| Q |
1 |
cgctctacaaagaatataataat---tccccaaaaatttaactactactctagacaaaatttatgataatctctttcctttcaacaaagctactttcacc |
97 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
31703082 |
cgctctacaaagaatataataataattccacaaaaatttaactactactctaggcaaaatttatgataatctcttcccattcaacaaagctactttcacc |
31702983 |
T |
|
| Q |
98 |
ttcttttcctgattcattcacattgtagaagcagaggtgataccaaatttatcagagtatttagttcgtgataataatggtgaaacaacttccatttgat |
197 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31702982 |
ttcttttcctaattca----cattgtagaagcagaggtgataccaaatttatcagagtatttagttcgtgataataatggtgaaacaacttccatttgat |
31702887 |
T |
|
| Q |
198 |
gaagaaactcaacatcatgaaccaatggattctctgttctg |
238 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
31702886 |
gaagaaactcaacatcatgaaccaaaggattctcagttctg |
31702846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University