View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1501_low_19 (Length: 248)
Name: NF1501_low_19
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 12321223 - 12320993
Alignment:
| Q |
15 |
ttgacaggtctactttcttttttgactatttcttttctcatcctactgatttcttgcacgccctacaaattttggattaatataatctgaaaacgtaaaa |
114 |
Q |
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| T |
12321223 |
ttgacaggtctactttcatttttgactatttcttttttca-cctactgatttcttgcacgcgctagaaattttgaatta-tataatccaaaaacgtaaaa |
12321126 |
T |
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| Q |
115 |
cacttaagaaaaacttctataacactccattttttaggattttataatctgaacagagcatacgagaagattgaaaggcgaaaaaagtaacagtcttatt |
214 |
Q |
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| T |
12321125 |
cacttgagaaaaacttctataacactccattttttcggattttataatctgaatagagcatacgagaagattgaaaggcga-aaaagtaacagtcttatt |
12321027 |
T |
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| Q |
215 |
ttctacaagacataccttggcttgaagaatactt |
248 |
Q |
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| T |
12321026 |
ttctacaagacataccttggcttgaagaatactt |
12320993 |
T |
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