View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1501_low_2 (Length: 495)
Name: NF1501_low_2
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 173 - 490
Target Start/End: Complemental strand, 33820750 - 33820434
Alignment:
| Q |
173 |
cttcatattcaaacaaaggaccgacaaatatgaggggctttatccctctgtctacttgcgggggtccaatctccggttaaagccacaacaacaaagctct |
272 |
Q |
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| T |
33820750 |
cttcatattcgaacaaaggaccgacaaatatgaggggctttatcccactgt-tacttgcgggggtccaatctccggttaaagccacaacaacaaagctct |
33820652 |
T |
|
| Q |
273 |
ctatggactaatccaccaaaattgtcatcggaaagaatcaagcttgaaatctcgagagaaatacactttaaggtctcaagccaacaacactagaccaaaa |
372 |
Q |
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| T |
33820651 |
ctatggactaacccaccaaaattgtcatcggaaagaatcaagcttaaaacctcgagagaaatatactttaaggtctcaagccaacaacactaaatcaaaa |
33820552 |
T |
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| Q |
373 |
taacacaacaaggttcaatagggatttaaatcattaattnnnnnnntagttaaatcccactaatataagaacaccgctataataagaacaataatgaaat |
472 |
Q |
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|||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33820551 |
taacacaacaaggttcaataggaatttaaattattaattaaaaaaatagttaaatcccactaatataagaacaccgctaaaataagaacaataatgaaat |
33820452 |
T |
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| Q |
473 |
ggtttattttagtcttat |
490 |
Q |
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|||||||||||||||||| |
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| T |
33820451 |
ggtttattttagtcttat |
33820434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 33820922 - 33820832
Alignment:
| Q |
1 |
gaacgaaatggaatgaatgaaaatgaaatgggttgtacatagtttaagtattttatgatggaataaaacaaaaagatggattttgggttga |
91 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33820922 |
gaacgaaatggaatgaatgaaaaagaaatggtttgtacatagtttaaatattttatgatggaataaaacaaaaagatggattttgggttga |
33820832 |
T |
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