View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1501_low_20 (Length: 238)
Name: NF1501_low_20
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 26130859 - 26130623
Alignment:
| Q |
1 |
aatttcataaatgtcttacatattttcggtttagggaaattaaatctgatttcctatcaaaatatggtcaaccaatgatgcagactagtttgcgatcact |
100 |
Q |
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| T |
26130859 |
aatttcataaatgtcttacatattttcggtttagggaaattaaatctgatttcctatcaaaatatggtcaaccaatgatgcaaactagtttgcgatcact |
26130760 |
T |
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| Q |
101 |
ggagaaatcggcagaaattcagttcacaaaggagatatttgtcatgtttcggtctattatgaaaagatcaatgcttcttaaaattacagaatgccacgaa |
200 |
Q |
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| T |
26130759 |
ggagaaatcggcagaaattcagttcacaaaggagatatttgtcatgtttcggtctattatgaaaagatcaatgcttcttaaaatgacagaatgccacgaa |
26130660 |
T |
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| Q |
201 |
atgtctacgtggtatattttcacagtttcaacatatt |
237 |
Q |
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| T |
26130659 |
atgtctacgtggtatattttcacagtttcaaaatatt |
26130623 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 21428517 - 21428577
Alignment:
| Q |
12 |
tgtcttacatattttcggtttagggaaattaaatctgatttcctatcaaaatatggtcaac |
72 |
Q |
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| T |
21428517 |
tgtcttacctattttcggtttaggaaaattgaatctgatttccattccaactatggtcaac |
21428577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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