View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1501_low_21 (Length: 237)

Name: NF1501_low_21
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1501_low_21
NF1501_low_21
[»] chr4 (2 HSPs)
chr4 (1-222)||(12313258-12313492)
chr4 (1-222)||(12320735-12320969)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 12313492 - 12313258
Alignment:
Q  1 atattgtgtgattggatctaattctatggaaactacttgacagccagtgcgtatggtttccattggcaaacaattggccatggctttgatcaaatcagtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  12313492 atattgtgtgattggatctaattctatggaaactacttgacagccagtacgtatagtttccattggcaaacaattggccatggctttgatcaaatcagtg 12313393  T
Q  101 cgttttaagcacctaaattctcgataaatcctgtttaaca-------------atcattaactatgagatgttacgaacatgatgtcaattctatacaga 187  Q
    ||||||||||||||||||||||||||||||||||||||||             || ||||||||||||||||||| ||||||||||| ||||||||||||    
T  12313392 cgttttaagcacctaaattctcgataaatcctgtttaacaagcaagattaactattattaactatgagatgttacaaacatgatgtccattctatacaga 12313293  T
Q  188 gagattgtgttctgccaattactcacccaaatggt 222  Q
    |||||||||||||||||||||||||||||||||||    
T  12313292 gagattgtgttctgccaattactcacccaaatggt 12313258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 12320969 - 12320735
Alignment:
Q  1 atattgtgtgattggatctaattctatggaaactacttgacagccagtgcgtatggtttccattggcaaacaattggccatggctttgatcaaatcagtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  12320969 atattgtgtgattggatctaattctatggaaactacttgacagccagtacgtatagtttccattggcaaacaattggccatggctttgatcaaatcagtg 12320870  T
Q  101 cgttttaagcacctaaattctcgataaatcctgtttaaca-------------atcattaactatgagatgttacgaacatgatgtcaattctatacaga 187  Q
    |||||||||||||||||||||  |||||||||||||||||             || |||||||||| |||||||| ||||||||||| ||||||||||||    
T  12320869 cgttttaagcacctaaattctttataaatcctgtttaacaagcaagattaactattattaactatgtgatgttacaaacatgatgtccattctatacaga 12320770  T
Q  188 gagattgtgttctgccaattactcacccaaatggt 222  Q
    |||||||||||||||||||||||||||||||||||    
T  12320769 gagattgtgttctgccaattactcacccaaatggt 12320735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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