View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1501_low_23 (Length: 224)
Name: NF1501_low_23
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 1181809 - 1182004
Alignment:
| Q |
14 |
atgaaaagaagaaaaagtgcattttactccaaaatgtttataattaatgttatatgtggcttgtgagttctgactctattttgtttatcatctaaaactg |
113 |
Q |
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| T |
1181809 |
atgaaaagaagaaaaagtgcattttactccaaaatgtttataattaatgttatatgtggcttgtgagttctgactctattttgtttatcatctaaaactg |
1181908 |
T |
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| Q |
114 |
cagattttctatgagacgctaatgagnnnnnnngacgattgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaa |
209 |
Q |
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| T |
1181909 |
cagattttctatgagacgctaatgagaaaaaaagacgattgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaa |
1182004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 209
Target Start/End: Original strand, 1192745 - 1192932
Alignment:
| Q |
26 |
aaaagtgcattttactccaaaatgtttataattaatgttatatgtggcttgtgagttctgactcta-ttttgtttatcatctaaaactgcagattttcta |
124 |
Q |
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| T |
1192745 |
aaaagtgcatttaactaaaaaatatttataattaatgttatgtgtggcttgtgagttctaactctatttttgtttatcatctaaaactacagtttttgta |
1192844 |
T |
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| Q |
125 |
tgagacgctaatgagnnnnnnng---acgattgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaa |
209 |
Q |
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| T |
1192845 |
tgagacgctaatgggaaaaaaagagaacaattgcttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaa |
1192932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 209
Target Start/End: Original strand, 896621 - 896811
Alignment:
| Q |
30 |
gtgcattttactccaaaatgtttataattaatgttat---atgtg--gcttgtgagttctg--actctattttgtttatcatctaaaactgcagattttc |
122 |
Q |
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| T |
896621 |
gtgcatttaactccaaaatatttataattaatgttatgttatgtgtagcttgtgagttgtataactctattttgtttatcatctaaaactacagtttttc |
896720 |
T |
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| Q |
123 |
tatgagacgctaatgagnnnnnnng-acgattgctttt---gcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaa |
209 |
Q |
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| T |
896721 |
tatgagacgctaatgggaaaaaaagaacgattgcttttgcagcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaa |
896811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 209
Target Start/End: Original strand, 1187059 - 1187226
Alignment:
| Q |
42 |
ccaaaatgtttataattaatgttatatgtggcttgtgagttctgactctattttgtttatcatctaaaactgcagattttctatgagacgctaatgagnn |
141 |
Q |
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| T |
1187059 |
ccaaattgttaatacttaatgttttgtgtagcttatgacttctaactctattttgtttatcatctaaaactacaatttttctatgagacgctaatgagaa |
1187158 |
T |
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| Q |
142 |
nnnnngacgattgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaa |
209 |
Q |
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| T |
1187159 |
aaaaaggcgattgcttttgcatttcttctaatacgaagtgttggtggcatggcttgaaggatgtgaaa |
1187226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 1197398 - 1197459
Alignment:
| Q |
148 |
acgattgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaa |
209 |
Q |
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|||| |||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||| |
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| T |
1197398 |
acgactgcttttgcagttctgatgatacaaagtgttggtggcatgacttgaaggatgtgaaa |
1197459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 26 - 209
Target Start/End: Original strand, 10203220 - 10203406
Alignment:
| Q |
26 |
aaaagtgcattttactccaaaatgtttataattaatgttatatgtggcttgtgagttctgactctattttgtttatcatctaaaactgcagattttctat |
125 |
Q |
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|||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||| |
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| T |
10203220 |
aaaagtgcatttatctccaaaatgtttataattaatgttttctgtggcttgtgagttctaactctattttgtttatcatctaaaactacagtttttttat |
10203319 |
T |
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| Q |
126 |
gagacgctaatgagnnnnnnng---acgattgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaa |
209 |
Q |
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| T |
10203320 |
gagacgctaatgggaaaaaaagagaacgattgcttttgcatttctactgaaactaagtgttggtggcatggcttgaaggatgtgaaa |
10203406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 5171560 - 5171616
Alignment:
| Q |
153 |
tgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaa |
209 |
Q |
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||||||||||||||| ||| | |||||||||||||||| |||||||||||||||| |
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| T |
5171560 |
tgcttttgcatttcttgtgataccaagtgttggtggcatggcttgaaggatgtgaaa |
5171616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 5195094 - 5195150
Alignment:
| Q |
153 |
tgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaa |
209 |
Q |
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|||||||||| |||| ||| | ||||||||||||||||| ||||||| |||||||| |
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| T |
5195094 |
tgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaa |
5195150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 5198992 - 5198936
Alignment:
| Q |
153 |
tgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaa |
209 |
Q |
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|||||||||| |||| ||| | ||||||||||||||||| ||||||| |||||||| |
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| T |
5198992 |
tgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaa |
5198936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 6231610 - 6231666
Alignment:
| Q |
153 |
tgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaa |
209 |
Q |
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|||||||||| |||| ||| | ||||||||||||||||| ||||||| |||||||| |
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| T |
6231610 |
tgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaa |
6231666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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