View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1501_low_3 (Length: 486)
Name: NF1501_low_3
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 28520316 - 28519849
Alignment:
| Q |
1 |
tggaggataaccaaatgcttatcgctccttttaatgatgtcgagttttctgaagcaattaaacaaccaggctttgttgtaggaagatccattacagataa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||| || |
|
|
| T |
28520316 |
tggaggataaccaaatgcttatcgctccttttaatgatgtcgagttttctgaagcggttaaaaaatcaggctttgttgcaggaagatccattacagaaaa |
28520217 |
T |
|
| Q |
101 |
tgtctttgtcgccttagaaatcatacattatttgaagtgcaggactcgaggtaagaaaggggaagcaacattaaaaatagatattagcaaaccatatgat |
200 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28520216 |
tgtgtttgtcgccttagaaatcatatattatttgaagtgcaagactcgaggtaagaaaggggaagcaacattaaaaatagatattagcaaatcatatgat |
28520117 |
T |
|
| Q |
201 |
cgtgttgattggaattatttgtttagcattttggacaggatgggtttcaactcagtgtggattacatgtgcgttactacaataacttaccatgttctgat |
300 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
28520116 |
cgtgttgaatggaattatttttttagaattttggaaaggatgggtttcaactcagtgtggattacatgtgtgttactacagtaagttaccatgttctgat |
28520017 |
T |
|
| Q |
301 |
caatgataacaaagtaggtcctatacatccaaggagaggtataagtcaaggtgacccttttcaccgtatgtgtttattatttgtgatgaaggtatgactg |
400 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28520016 |
caatgataacaaagtaggtctaatacatccaaggagaggtataagtcaaggtgacccttttcaccatatgtgtttattatttgtgatgaaggtatgactg |
28519917 |
T |
|
| Q |
401 |
ctctgatcaaacaagctgaacaaaatagaattctccatggagttcaggtttgccgaagagcgcccact |
468 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28519916 |
ctctgatcaaacaagctgaacgaaatagaattctccatggagttcaggtttgccgaagagcgcccact |
28519849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University