View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1501_low_4 (Length: 475)
Name: NF1501_low_4
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 419
Target Start/End: Original strand, 45146728 - 45147117
Alignment:
| Q |
13 |
agcaaaggtctgaagtgggg-cactgaagtgtatcgttgatccgacaatctttcagaagcaagggcgctatggtataggatgtgtatgaaggataataaa |
111 |
Q |
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| T |
45146728 |
agcaaaggtctgaagtgggggcgctgaagtgtatcgttgatccgacaatctttcaaaagcaaggacgctatggtataggatgtgtatgaaggacaataaa |
45146827 |
T |
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| Q |
112 |
ggtgagttcttggtaaaaaaggttaccacaatctaaagaagctgaaatgaggcttaaaggaggcaatcaattgacttggtagttgaaatatgagttttca |
211 |
Q |
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| T |
45146828 |
ggtgagttcttggtataaaaggttaccacaatctaaagaagctggaatgaggcttaaaggaggcaatcagttgacttggtagctgaaat--gagttttaa |
45146925 |
T |
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| Q |
212 |
gagttgtctatcgaacttggtggtaagcaactggtcgacggtatccatagtaaattcaatatcaatttcaactttgctagtattttaaatttttgtaagg |
311 |
Q |
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| T |
45146926 |
gaggtgtctatcgaacttgatcgtaagtaagtggttgactatatccatagtaaattcaatatcaatttcaattttgctagtattttaaatttttgtaagg |
45147025 |
T |
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| Q |
312 |
cttcaagcagttcgacttaaaacttcaagataaattttattcgcaaacaaataaataaattaatgttgttcatttattagccacaacaacattgtcccac |
411 |
Q |
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| T |
45147026 |
cttcacgtagttcgacttaaaactttaagataaattttattcgcaaa----------------tgtcgttcatttattagccacaacaacattgtcctac |
45147109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 461
Target Start/End: Original strand, 45147171 - 45147206
Alignment:
| Q |
426 |
ctaacattcattttcttaatgagatgaagtaaaatt |
461 |
Q |
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| T |
45147171 |
ctaacattcattttcttaatgagacgaagtaaaatt |
45147206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 14264492 - 14264536
Alignment:
| Q |
55 |
gacaatctttcagaagcaagggcgctatggtat-aggatgtgtat |
98 |
Q |
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| T |
14264492 |
gacaatctttcaggagcaagggcggtatggtataaggatgtgtat |
14264536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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