View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1501_low_5 (Length: 451)
Name: NF1501_low_5
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 50521924 - 50521644
Alignment:
| Q |
14 |
atatacttgacacagaaagataaggttccttaggtgctagaattagcctgtaatactaaaaatattgaaattgtggataacttacccaacaatccataag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50521924 |
atatacttgacacagaaagataaggttccttaggtgctggaattagcctgtaatactaaaaatattgaaattgtggataacttacccaacaatccataag |
50521825 |
T |
|
| Q |
114 |
aaatagttctttc-----nnnnnnnnntccgtaatagttacatgggtaaatttgcaagtgacattgacaaatctctctnnnnnnnntgtggtattaacaa |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50521824 |
aaatagttctttcaaaataaaaaaaaatccgtaatagttacatgggtaaatttgcaagtgacattgacaaatctctctaaaaaaaatgtggtattaacaa |
50521725 |
T |
|
| Q |
209 |
ataatttttacttcacttgcaaatttgtttaaatggctaatttttattgattatttggtaaattatccacaattcttcttg |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50521724 |
ataatttttacttcacttgcaaatttgtttaaatggctaatttttattgattatttgataaattatccacaattcttcttg |
50521644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 326 - 434
Target Start/End: Complemental strand, 50521615 - 50521507
Alignment:
| Q |
326 |
ctttaacaataagtgttcgatgaattaattaaacttaagatgagttattattaatttactcatgagtagaactttaagatatatcatttgtgtgtaggta |
425 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50521615 |
ctttaacaattagtgttcgatatattaattaaacttaagatgagttattactaatttactcatgagtagaactttaagatatatcatttgtgtgtaggta |
50521516 |
T |
|
| Q |
426 |
cgtaccttc |
434 |
Q |
| |
|
||||||||| |
|
|
| T |
50521515 |
cgtaccttc |
50521507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 44674509 - 44674424
Alignment:
| Q |
197 |
tggtattaacaaataatttttacttcacttgcaaatttgtttaaatggctaatttttattgattatttggtaaattatccacaatt |
282 |
Q |
| |
|
||||||| ||||| | |||||| ||| |||||||||| |||| | |||||||||||||||| || | |||||||||||||||| |
|
|
| T |
44674509 |
tggtattcacaaactaattttacatcatttgcaaatttacttaagtaactaatttttattgattgttagataaattatccacaatt |
44674424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 5410661 - 5410706
Alignment:
| Q |
210 |
taatttttacttcacttgcaaatttgtttaaatggctaatttttat |
255 |
Q |
| |
|
||||||||||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
5410661 |
taatttttacttcacttgcaaatttatttacgtcgctaatttttat |
5410706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University