View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1501_low_6 (Length: 406)
Name: NF1501_low_6
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 150011 - 149640
Alignment:
| Q |
1 |
tgctaaaagactcaatgagtgttgactgatattaagtcttcataccactgcctccaaatgcgctatacggagtaaattaattaatctaattactacaatt |
100 |
Q |
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| T |
150011 |
tgctaaaagactcaatgagtgttgactgatattaagtcttcataccactgcctccaaatgcgctatacggagtaaattaattaatctaattactacaatt |
149912 |
T |
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| Q |
101 |
ttgaccatgattgatccatcatgaaataaaaccaattcacaaatatagctcaataattatttgctttcgtatgtctgatgaggtgggatgagattatatg |
200 |
Q |
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| T |
149911 |
ttgaccatgatcgatccatcatgaaataaaaccaattcacaaatatagctcaataattatttgctttcgtatgtgtgatgaggtgggatgagattatatg |
149812 |
T |
|
| Q |
201 |
gatacgtcatatggaaagatggatgggacatcccttgctcaggagcatttataaggtaatcttaaattgtatatgcaattaattatcatcacctcttcct |
300 |
Q |
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| T |
149811 |
gatacgtcatatggaaagatggatgggacatcccttgctcaggagcatt--------------------tatatgcaatcaattatcatcacctcttcct |
149732 |
T |
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| Q |
301 |
tcactctccctccatattatgttgttcacatgaggtatggaattattgtgaagtggcatgagagcttgatacaaagaaaaattccttataattcat |
396 |
Q |
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| T |
149731 |
tcact----ctccatattatgttgttcacatgaggtatggaattattgtgaagtggcatgagagcttgatacaaagaaaaattccttataattcat |
149640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 256 - 365
Target Start/End: Complemental strand, 154883 - 154777
Alignment:
| Q |
256 |
gtaatcttaaattgtatatgcaatt-aattatcatcacctcttccttcactctccctccatattatgttgttcacatgaggtatggaattattgtgaagt |
354 |
Q |
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| T |
154883 |
gtaatcttcaattgtatatgcaactcaattatcatcacctcttccttcactctcc----atattatgttgttcacatgcggtatggaattattgtgaagt |
154788 |
T |
|
| Q |
355 |
ggcatgagagc |
365 |
Q |
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|||||||||| |
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| T |
154787 |
agcatgagagc |
154777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 155003 - 154943
Alignment:
| Q |
145 |
atagctcaataattatttgctttcgtatgtctgatgaggtgggatgagattatatggatac |
205 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
155003 |
atagctcaataattatttgcttttgtatatctgatgaggtgggatgagattatatggatac |
154943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 157900 - 157849
Alignment:
| Q |
1 |
tgctaaaagactcaatgagtgttgactgatattaagtcttcataccactgcc |
52 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
157900 |
tgctgaaagactcaatgagtgttgactgatgttaagtcttcataccactgcc |
157849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 48087972 - 48088045
Alignment:
| Q |
48 |
ctgcctccaaatgcgctatacggagtaaattaattaatctaattactacaattttgaccatgattgatccatcatgaaataaaac |
132 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
48087972 |
ctgcctccaaatgcgatatacggagtaaattaat----ctaattac---aattttgaccatgat----ccatcatgaaataaaac |
48088045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 23691880 - 23691843
Alignment:
| Q |
359 |
tgagagcttgatacaaagaaaaattccttataattcat |
396 |
Q |
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||||||||||||||||||||||| |||||| ||||||| |
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| T |
23691880 |
tgagagcttgatacaaagaaaaaatccttaaaattcat |
23691843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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