View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1501_low_7 (Length: 396)
Name: NF1501_low_7
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_7 |
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| [»] chr6 (3 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 14 - 396
Target Start/End: Original strand, 32589996 - 32590382
Alignment:
| Q |
14 |
caataacttcagagttgcttatcaattcatacgtgatattatccattgcttgaatattacaaccaactaataaaggggcctatttta-----acccaata |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |
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| T |
32589996 |
caataacttcagagttgcttatcaattcatacgtgatattatccattgcttgaatattacaaccaactaataaaggggcctatttaatttaaaccaaata |
32590095 |
T |
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| Q |
109 |
aaatagttnnnnnnnnncaaattaatgacatattaattactttgtctcaacaataggtatataaaaattatttcatgcaccttagctaatgcccaaatgc |
208 |
Q |
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| T |
32590096 |
aaatagttaaaaaaaa-caaattaatgacatatatattactttgtctcaacaataggtatataaaaattatttcatgcaccttagctaatgcccagatgc |
32590194 |
T |
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| Q |
209 |
tgaaatgggcacgatattcctctgttgtcattcctccatttccaacttcaagcatatcaggatctaatatccaatcattaatgacacatacgaggaatta |
308 |
Q |
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| T |
32590195 |
tgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaagcatatcaggatctaatatccaaacattaatgacacatacgaggaatta |
32590294 |
T |
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| Q |
309 |
atattggagtttgatgtacttgtaatgatcttaaacttaacattcataaaattattagtgaggttagttaattaccattccatcctcc |
396 |
Q |
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| T |
32590295 |
atattggagtttgatgtacttgtaatgatcttaaacttaacattcataaaattattagtgaggttaattaattaccattccatcctcc |
32590382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 396
Target Start/End: Original strand, 32600444 - 32600830
Alignment:
| Q |
14 |
caataacttcagagttgcttatcaattcatacgtgatattatccattgcttgaatattacaaccaactaataaaggggcctatttta-----acccaata |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |
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| T |
32600444 |
caataacttcagagttgcttatcaattcatacgtgatattatccattgcttgaatattacaaccaactaataaaggggcctatttaatttaaaccaaata |
32600543 |
T |
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| Q |
109 |
aaatagttnnnnnnnnncaaattaatgacatattaattactttgtctcaacaataggtatataaaaattatttcatgcaccttagctaatgcccaaatgc |
208 |
Q |
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| T |
32600544 |
aaatagttaaaaaaaa-caaattaatgacatatatattactttgtctcaacaataggtatataaaaattatttcatgcaccttagctaatgcccagatgc |
32600642 |
T |
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| Q |
209 |
tgaaatgggcacgatattcctctgttgtcattcctccatttccaacttcaagcatatcaggatctaatatccaatcattaatgacacatacgaggaatta |
308 |
Q |
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| T |
32600643 |
tgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaagcatatcaggatctaatatccaaacattaatgacacatacgaggaatta |
32600742 |
T |
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| Q |
309 |
atattggagtttgatgtacttgtaatgatcttaaacttaacattcataaaattattagtgaggttagttaattaccattccatcctcc |
396 |
Q |
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| T |
32600743 |
atattggagtttgatgtacttgtaatgatcttaagtttaacatgcataacattactagtgaggttaattaattaccattccatcctcc |
32600830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 24883774 - 24883687
Alignment:
| Q |
186 |
caccttagctaatgcccaaatgctgaaatgggcacgatattcctctgttgtcattcctccatttccaacttcaagcatatcaggatct |
273 |
Q |
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| T |
24883774 |
caccttaactaatgcccatatgctgaaatgggcacgatattcttctgttgtcatacctccatttccaacttcaagcatgtcaggatct |
24883687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 396
Target Start/End: Original strand, 34577763 - 34578142
Alignment:
| Q |
14 |
caataacttcagagttgcttatcaattcatacgtgatattatccattgcttgaatattacaaccaactaataaaggggcctattttaacccaataaaata |
113 |
Q |
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|||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |||| | |||||| |
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| T |
34577763 |
caataacttctgagttgcttatcaattcatatgtggtattatccattgcttgaatattacatccaactaataaaggagcctatttaaaccaataaaaata |
34577862 |
T |
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| Q |
114 |
gttnnnnnnnnncaaattaatgacatattaattactttgtctcaacaataggtatataaaaattatttcatgcaccttagctaatgcccaaatgctgaaa |
213 |
Q |
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||| |||| | ||||||||| ||| | ||||||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||||| |
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| T |
34577863 |
gttaaacga---caaacttatgacatatatattgcagtgtctcaacaatatgtatataaaaagtgtttcatgtaccttagctaatgcccaaatgctgaaa |
34577959 |
T |
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| Q |
214 |
tgggcacgatattcctctgttgtcattcctccatttccaacttcaagcatatcaggatctaatatccaatcattaatgacacatacgaggaattaatatt |
313 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34577960 |
tgggcacgatattcctctgtggtcatgcctccatttccaacttcaagcatatcaggatctaatatccaaacattaatgacacatacgaggaattaatatt |
34578059 |
T |
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| Q |
314 |
ggagtttgatgtacttgtaatgatcttaaacttaacattcataaaattattagtgaggttagttaattaccattccatcctcc |
396 |
Q |
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| T |
34578060 |
ggagtttgatgtacttgtaatgatcttaagtttaacatgcataacattactagtgaggttaattaattaccattccatcctcc |
34578142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 187 - 277
Target Start/End: Original strand, 34593767 - 34593857
Alignment:
| Q |
187 |
accttagctaatgcccaaatgctgaaatgggcacgatattcctctgttgtcattcctccatttccaacttcaagcatatcaggatctaata |
277 |
Q |
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||||||||||| ||||| ||||||||||| | ||||||||| ||||| ||||| |||||||| ||||| |||||||| ||||||||||||| |
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| T |
34593767 |
accttagctaaagcccatatgctgaaatgtgaacgatattcttctgtagtcatgcctccattcccaacctcaagcatgtcaggatctaata |
34593857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 34593548 - 34593630
Alignment:
| Q |
14 |
caataacttcagagttgcttatcaattcatacgtgatattatccattgcttgaatattacaaccaactaataaaggggcctat |
96 |
Q |
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| T |
34593548 |
caataacttccgagttagttattaattcatatgtggtattatccattgcacgaatatcacaaccaaccaataaaggagcctat |
34593630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 27532418 - 27532378
Alignment:
| Q |
233 |
ttgtcattcctccatttccaacttcaagcatatcaggatct |
273 |
Q |
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| T |
27532418 |
ttgtcatccctccatttccaacctcaagcatatcaggatct |
27532378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 27526764 - 27526724
Alignment:
| Q |
233 |
ttgtcattcctccatttccaacttcaagcatatcaggatct |
273 |
Q |
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| T |
27526764 |
ttgtcatccctccatttccaacctcaagcatgtcaggatct |
27526724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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