View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1501_low_8 (Length: 358)
Name: NF1501_low_8
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 6 - 344
Target Start/End: Original strand, 26130867 - 26131205
Alignment:
| Q |
6 |
aaaatcagtcatatttatccgagaatgcacataatgtttgatgtggctatggagtgcctcacaacaacatgtggttcttataccagcaaagaaacttcct |
105 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26130867 |
aaaatcagtcatatttatccgagaatgcacatattgtttgatgtggctatggagtgcctcacaacaacatgtggttcttataccagcaaagaaacttcct |
26130966 |
T |
|
| Q |
106 |
ctaatgtgggcagtcgcccacatcttcttcttttcatacatttcattgatccaagtgttgtcttgtaacgcaaacttttgaaccatctcagaccacaacc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26130967 |
ctaatgtgggcagtcgcccacatcttcttcttttcatacatttcattgatccaagtgttgtcttgtaacccaaacttttgaaccatctcagaccacaact |
26131066 |
T |
|
| Q |
206 |
cttcaaatttattaacctcaatgtcagccagcatgcattttttaagataaggcataaaatcgggaatcccaatcttggttgatgcattctttaacagatg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26131067 |
cttcaaatttattaacctcaatgtcagccagcatgcattttttaagataaggcataaaatcgggaatcccaatcttggttgatgcattctttaacagatg |
26131166 |
T |
|
| Q |
306 |
ccaagcacacaatctgtgatgggcggcagggaatatttt |
344 |
Q |
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| T |
26131167 |
ccaagcacacaatctgtgatgggctgcagggaatatttt |
26131205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 6 - 323
Target Start/End: Complemental strand, 11010727 - 11010410
Alignment:
| Q |
6 |
aaaatcagtcatatttatccgagaatgcacataatgtttgatgtggctatggagtgcctcacaacaacatgtggttcttataccagcaaagaaacttcct |
105 |
Q |
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|||| ||||||| ||||||||||||||||| || ||| ||||||||||||||||||||||||| | | |||||||||||| ||||||||||||||||| |
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| T |
11010727 |
aaaaccagtcatgtttatccgagaatgcacgtattgtcccatgtggctatggagtgcctcacaacgaaaggtggttcttatatcagcaaagaaacttcct |
11010628 |
T |
|
| Q |
106 |
ctaatgtgggcagtcgcccacatcttcttcttttcatacatttcattgatccaagtgttgtcttgtaacgcaaacttttgaaccatctcagaccacaacc |
205 |
Q |
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|| |||| | || ||||||||||||||||||| ||||| |||||||||||| |||||| || |||| ||||||||||||||||||||||| ||| |
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| T |
11010627 |
ctgatgtaagaggtgacccacatcttcttcttttcgtacatctcattgatccaactgttgttttctaacccaaacttttgaaccatctcagacaacagat |
11010528 |
T |
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| Q |
206 |
cttcaaatttattaacctcaatgtcagccagcatgcattttttaagataaggcataaaatcgggaatcccaatcttggttgatgcattctttaacagatg |
305 |
Q |
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||||||||| |||| |||||||||| ||| |||||||||||| ||||||| ||||||||| ||||||||||| ||||| || |||||| |||||||||| |
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| T |
11010527 |
tttcaaatttgttaatctcaatgtcacccaacatgcattttttcagataagacataaaatcaggaatcccaatgttggtggaagcattccttaacagatg |
11010428 |
T |
|
| Q |
306 |
ccaagcacacaatctgtg |
323 |
Q |
| |
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||| |||||||| ||||| |
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| T |
11010427 |
ccaggcacacaacctgtg |
11010410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 121 - 323
Target Start/End: Original strand, 35241744 - 35241946
Alignment:
| Q |
121 |
gcccacatcttcttcttttcatacatttcattgatccaagtgttgtcttgtaacgcaaacttttgaaccatctcagaccacaacccttcaaatttattaa |
220 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||||||| |||||| || |||| ||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
35241744 |
gcccacatcttcttcttttcgtacatctcattgatccaattgttgttttctaacccaaacttttgaaccatctcagaccacagatcttcaaatttgttaa |
35241843 |
T |
|
| Q |
221 |
cctcaatgtcagccagcatgcattttttaagataaggcataaaatcgggaatcccaatcttggttgatgcattctttaacagatgccaagcacacaatct |
320 |
Q |
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||||||||||| ||||||||||||||| ||||||| ||||||||| ||||||||||| ||||| | |||||| |||||||||||||||||||||| || |
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| T |
35241844 |
tctcaatgtcagtcagcatgcattttttcagataagacataaaatcaggaatcccaatgttggtgcaagcattccttaacagatgccaagcacacaacct |
35241943 |
T |
|
| Q |
321 |
gtg |
323 |
Q |
| |
|
||| |
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|
| T |
35241944 |
gtg |
35241946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 256
Target Start/End: Complemental strand, 21428363 - 21428243
Alignment:
| Q |
136 |
ttttcatacatttcattgatccaagtgttgtcttgtaacgcaaacttttgaaccatctcagaccacaacccttcaaatttattaacctcaatgtcagcca |
235 |
Q |
| |
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||||||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||| ||| ||| ||||||| | | | ||||| |||| ||| |
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| T |
21428363 |
ttttcatacatctcattgatccaactgttgtcttgtaaaccaaacttttcaaccatctcaacccataactcttcaaacgcactgatctcaaggtcaccca |
21428264 |
T |
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| Q |
236 |
gcatgcattttttaagataag |
256 |
Q |
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|||||||||||| ||||||| |
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| T |
21428263 |
acatgcattttttcagataag |
21428243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 25813948 - 25813874
Alignment:
| Q |
122 |
cccacatcttcttcttttcatacatttcattgatccaagtgttgtcttgtaacgcaaacttttgaaccatctcag |
196 |
Q |
| |
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||||||||||||| || || |||| ||||||||||||| ||||||||| ||| ||||| | |||||||| |||| |
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| T |
25813948 |
cccacatcttctttttctcgtacaattcattgatccaattgttgtcttctaaaccaaacctctgaaccatttcag |
25813874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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