View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1501_low_9 (Length: 345)
Name: NF1501_low_9
Description: NF1501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1501_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 35761826 - 35762161
Alignment:
| Q |
1 |
actgttggattaacctttgattcttccaatagggactggtcggtgttgttaaaagatgcttcggaagcagtgattatgaacttgttggagttagaggaag |
100 |
Q |
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| T |
35761826 |
actgttggattaacctttgattcttccaatagggactggtcggtgttgttaaaagatgcttcggaagcagtgattatgaacttgttggagttagaggaag |
35761925 |
T |
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| Q |
101 |
agcgtaagctcctcaaggggaaacactgaataatatggatcacaatttagttcatcaaccatggacactttaactcaaatatgtttgtttattaattatt |
200 |
Q |
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| T |
35761926 |
agcgtaagctcctcaaggggaaacactgaataatatggatcacaatttagttcatcaaccatggacactttaactcaaatatgtttgtttattaattatt |
35762025 |
T |
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| Q |
201 |
ctttgaaag--nnnnnnnnnnnnttaagttagcaagcaaccaagtatagggctttctaatttaatatcacccaatcattttctctaaatatttgggtttt |
298 |
Q |
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| T |
35762026 |
ctttgaaagaaagaaaaaaaaaattaagttagcaagcaaccaagtatagggctttctaatttaatatcacccaattattttctctaaatatttgggtttt |
35762125 |
T |
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| Q |
299 |
tgtttatcagtttaacttggaataaacccacatttt |
334 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
35762126 |
tgtttatcggtttaacttggaataaacccacatttt |
35762161 |
T |
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