View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15020_low_3 (Length: 266)
Name: NF15020_low_3
Description: NF15020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15020_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 2968867 - 2968629
Alignment:
| Q |
6 |
agataaaagataaaaactatagtttcagcaaagtttatttttattacaacccttaaaacttagaagaaaaaagagacggaaggattaagattggaaatag |
105 |
Q |
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| T |
2968867 |
agataaaagataaaaactatagtttcagcaaagtttatttttataacaacccttaaaacttagaagaaaaaagagagggaaggattaagattggaaatag |
2968768 |
T |
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| Q |
106 |
------------ttgctaaatttgcaccaaggatattggatgtatcctgaaatcagattccttgtgtaatgcaattacggatctcaactgtcctatcatg |
193 |
Q |
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| T |
2968767 |
acatgaaaatagttgctaaatttgcaccaaggatattggatgtatcctgaaatcacattccttgtgtaatgcagttacggatctcaactgtcctatcatg |
2968668 |
T |
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| Q |
194 |
gacagttcctatctaaatcagttacagattattcaatgt |
232 |
Q |
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| T |
2968667 |
gacagttcctatctaaatcagtcacagattattcaatgt |
2968629 |
T |
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