View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15021_low_4 (Length: 213)
Name: NF15021_low_4
Description: NF15021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15021_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 4e-80; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 34820501 - 34820683
Alignment:
| Q |
18 |
tatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccgacatcaattttagtaatactttc |
117 |
Q |
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| T |
34820501 |
tatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttc |
34820600 |
T |
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| Q |
118 |
gtcaacaaaactactattattttcagcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacct |
200 |
Q |
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| T |
34820601 |
gtcaacaaaactactattatttttagcttcatctaagttgtcatctacaagctgatggttaacctcagcttccaaagccacct |
34820683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 34820618 - 34820813
Alignment:
| Q |
18 |
tatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccgacatcaattttagtaatactttc |
117 |
Q |
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| T |
34820618 |
tatttttagcttcatctaagttgtcatctacaagctgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctc |
34820717 |
T |
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| Q |
118 |
gtcaacaaaactactattattttcagcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacctttgccttaccaac |
213 |
Q |
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| T |
34820718 |
gtcaacaaaactactattattttcagcttcatctaatttgtcgtctacgagctgatggttaacttcaacttccaaagccacctttgccttaccaac |
34820813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 34820384 - 34820566
Alignment:
| Q |
18 |
tatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccgacatcaattttagtaatactttc |
117 |
Q |
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| T |
34820384 |
tattttcagcttcatctgatttatcttccgcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctc |
34820483 |
T |
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| Q |
118 |
gtcaacaaaactactattattttcagcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacct |
200 |
Q |
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| T |
34820484 |
gtcaacaaaactaatattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacct |
34820566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 200
Target Start/End: Original strand, 34820281 - 34820449
Alignment:
| Q |
32 |
tctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccgacatcaattttagtaatactttcgtcaacaaaactac |
131 |
Q |
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| T |
34820281 |
tctgatttgtcgtctgcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaac |
34820380 |
T |
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| Q |
132 |
tattattttcagcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacct |
200 |
Q |
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| T |
34820381 |
tattattttcagcttcatctgatttatcttccgcgagctgatggtcaacctcaactttcaaaaccacct |
34820449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 34820735 - 34820878
Alignment:
| Q |
18 |
tatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccgacatcaattttagtaatactttc |
117 |
Q |
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| T |
34820735 |
tattttcagcttcatctaatttgtcgtctacgagctgatggttaacttcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctc |
34820834 |
T |
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| Q |
118 |
gtcaacaaaactactattattttcagcttcatctaatttgtcgt |
161 |
Q |
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| T |
34820835 |
gtcaacaaaactactattatttccagcttcatctaacttgtcgt |
34820878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 47 - 200
Target Start/End: Original strand, 34820179 - 34820332
Alignment:
| Q |
47 |
gcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccgacatcaattttagtaatactttcgtcaacaaaactactattattttcagctt |
146 |
Q |
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||||| |||||||||| |||| |||||||| ||||| |||||||| |||| | |||| || || || |||||||||||||||||||||| |||||||| |
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| T |
34820179 |
gcgagttgatggtcaacctcagcttccaaagtcacctatgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagctt |
34820278 |
T |
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| Q |
147 |
catctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacct |
200 |
Q |
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| T |
34820279 |
tgtctgatttgtcgtctgcgagttgatggtcaaccacaacttccaaagccacct |
34820332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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