View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15022_high_15 (Length: 297)
Name: NF15022_high_15
Description: NF15022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15022_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 39738146 - 39737869
Alignment:
| Q |
1 |
ttatttatttattaatttctcttgtttcaattcttttcttgtttcttcctcattgtcattaataaagaaataaataattttataaaagtcatttcctaaa |
100 |
Q |
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| T |
39738146 |
ttatttatttattaatttctcttttttcaattattttcttgtttcttcctcattgccattaataaagaaataaataattttataaaagtcatttcctaaa |
39738047 |
T |
|
| Q |
101 |
cataagtgaggtcctactgctttaatgtcaccggcaaatcttacaatatctagtataggaatggtagaaattgtaaactaagcttgcttcaaggtttttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39738046 |
cataagtgaggtcctactgctttaatgtcaccggcaaatcttacaatatctagtataggaatggtagaaattgtaaactaagcttgcttcaaggtttttg |
39737947 |
T |
|
| Q |
201 |
ccgccacccgagaatatttaattacatctaatgaaaataatgtcctccgtcaaagaacagcaccgataaataaaatta |
278 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39737946 |
ccgccacccaagaatatttaattacatctaatgaaaataatgtcctccgtcaaagaacagcaccgataaataaaatta |
39737869 |
T |
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