View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15022_high_16 (Length: 283)
Name: NF15022_high_16
Description: NF15022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15022_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 52768607 - 52768871
Alignment:
| Q |
1 |
gaaaaatcaattcgacaagggagaaattggctttcgtacttctaaataagagctatatgcagttaaatgggatacgatgtcaaagatattttaatgaaaa |
100 |
Q |
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| T |
52768607 |
gaaaaatcaattcgacaagggagaaattggctttcgtacttctaaataagagctatatgcagttaaatgggatacaatgtcaaagatattttaatgaaaa |
52768706 |
T |
|
| Q |
101 |
tggatgaaagagaaaagtgtggaaaataaacctgcgtaaaagaaagatttactagataagaaataaactgtccaccagttatcataagcacgtttgtggc |
200 |
Q |
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| T |
52768707 |
tggatgaaagagacaagtgtggaaaataaacctgcgtaaaagaaagatttactagataagaaataaactgtccaccagttatcataagcacgtttgtggc |
52768806 |
T |
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| Q |
201 |
tacaagtcctccccttatttctgatggtgacaattctgcaatataaacgggagcagtaactgaag |
265 |
Q |
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| T |
52768807 |
tacaagtcctccccttatttctgatggtgacaattctgcaatatacacgggagcagtaactgaag |
52768871 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 254
Target Start/End: Original strand, 38013711 - 38013821
Alignment:
| Q |
144 |
aagatttactagataagaaataaactgtccaccagttatcataagcacgtttgtggctacaagtcctccccttatttctgatggtgacaattctgcaata |
243 |
Q |
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||||||||| || ||||||| ||||||||||||||||||||||||||| |||||| || | |||||||||||||||||||| ||||||||||| |
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| T |
38013711 |
aagatttacgaggtaagaaagaaactgtccaccagttatcataagcacatttgtgctaaccaacgaaccccttatttctgatggtgaggattctgcaata |
38013810 |
T |
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| Q |
244 |
taaacgggagc |
254 |
Q |
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|| || ||||| |
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| T |
38013811 |
tatacaggagc |
38013821 |
T |
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