View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15022_high_19 (Length: 254)
Name: NF15022_high_19
Description: NF15022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15022_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 15234234 - 15234469
Alignment:
| Q |
1 |
tgcagcccaacaatcatggtaacatgtagggagaggatactcaggagcaagactatattcaatggaaacaattatcacatttgcttgtgatgcaaaggtt |
100 |
Q |
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| T |
15234234 |
tgcagcccaacaatcatggtaacatgtagggagaggatactcaggagcaagactatattcaatggaaacaattatcacatttgcttgtgatgcaaaggtt |
15234333 |
T |
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| Q |
101 |
ttcaaatggtcatggtacttcttcgagaatgttgattcgaacatgaaaacgcggccatgaaaataaaccaagattggaaatttggaaagtgggtttgtga |
200 |
Q |
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| T |
15234334 |
ttcaaatgttcatggtacttcttcgagaatgttgattcgaacatgaaaacgccgccatgaaaataaaccaagattggaaatttggaaagtgggtttgtga |
15234433 |
T |
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| Q |
201 |
tttttggaaggtaaatacgagatgaaattgtggggt |
236 |
Q |
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| T |
15234434 |
tttttggaaggtaaatacgagatgaaattgtggggt |
15234469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 17473289 - 17473054
Alignment:
| Q |
1 |
tgcagcccaacaatcatggtaacatgtagggagaggatactcaggagcaagactatattcaatggaaacaattatcacatttgcttgtgatgcaaaggtt |
100 |
Q |
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| T |
17473289 |
tgcagcccaacaatcatggtaacatgtagggagaggatactcaggagcaagtctatattcaattgaaacaacaatcacatttgcttgtgatgcaaagatt |
17473190 |
T |
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| Q |
101 |
ttcaaatggtcatggtacttcttcgagaatgttgattcgaacatgaaaacgcggccatgaaaataaaccaagattggaaatttggaaagtgggtttgtga |
200 |
Q |
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| T |
17473189 |
ttcaaatggtcatggtacaactttgagaatgcggattcgaagatgaaagcgccgccatgaaaataaaccaggattggaaattttgaaggtgggtttgtga |
17473090 |
T |
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| Q |
201 |
tttttggaaggtaaatacgagatgaaattgtggggt |
236 |
Q |
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| T |
17473089 |
tttttagaaggtatatgcgagatgaaattgtggggt |
17473054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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