View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15022_high_2 (Length: 475)
Name: NF15022_high_2
Description: NF15022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15022_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 181 - 463
Target Start/End: Original strand, 36756153 - 36756426
Alignment:
| Q |
181 |
gtagaaaatgactataagttaataactaacatatgtatgtatgtgttgtaacgttgaattgactcccttcaaattagattcgttaattagtc-cctaatt |
279 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36756153 |
gtagaaaaggactataagttaataactaacatatgtatgt----gttgtaacgttgaattgactcccttcaaattagattcgttaattagtctcctaatt |
36756248 |
T |
|
| Q |
280 |
gcatgatgatttgagaaaatgtaaacaagacccaagaagagtggtcaattacgtaacaattctt---atatttggatttattagac-aagttcaaaattg |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| |
|
|
| T |
36756249 |
gcatgatgatttgagaaaatgtaaacaagacccaaaa---gtggtcaattacgtaacaattcttcttatatttggattta---gactaagttcaaaattg |
36756342 |
T |
|
| Q |
376 |
actccaaataagcaagcagccgtgtttggtttttcatttcttccagaagcaagcaagcaagcaactgttcccatcacacacacgccta |
463 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36756343 |
actccaaacaagcaagcagccgtgtttggtttttcatttcttccag----aagcaagcaagcaactgttcccatcacacacacgccta |
36756426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 36755881 - 36755937
Alignment:
| Q |
131 |
gtagattttaaaagtatccattttgttggatcagatgaaaatggtgatttgtagaaa |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
36755881 |
gtagattttaaaagtatccattttgttggataagatgaaaatggtggtttgtagaaa |
36755937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University