View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15022_high_6 (Length: 441)
Name: NF15022_high_6
Description: NF15022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15022_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 503473 - 503154
Alignment:
| Q |
8 |
gagcagagatggcatccttattattaatatcatgaacttgaatcattgaaaggccattcactttcctgtcgacccaacgctgagatcctttcctggagag |
107 |
Q |
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| T |
503473 |
gagcagagatggcatccttattattaatatcatgaacttgaagcattgaaaggccattcactttcctgtcgaccccacgctgagatcctttcctggagag |
503374 |
T |
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| Q |
108 |
gctcctctgcaaccctttctggtcagaatactattaatatattaacataatgacgacattaaaatgtgaaacccttaaactaataaacgaagaagacaac |
207 |
Q |
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| T |
503373 |
gctcctctgcaaccctttctggtcagaatactattaatatattaacataatgacgacattaaaatgtgaaacccttaaactaataaacgaagaagacaac |
503274 |
T |
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| Q |
208 |
aggaagttggcccat----tttgcatgcaaattttgagctgaatataaaagtaggaggggaaggatatttagattatcattatccagtcttttaaggttt |
303 |
Q |
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| T |
503273 |
aggaagttggcccattttatttgcatgcaaattttgagctgaatataaaagtaggaggggaagga---ttagattatcattatccagtcttttaaggttt |
503177 |
T |
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| Q |
304 |
cgttgaggtttttcgtaacgata |
326 |
Q |
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| T |
503176 |
cgttgaggtttttcgtaacgata |
503154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 503155 - 503115
Alignment:
| Q |
376 |
tatgaatggtgaagaatgtgtgtgtattctacaacgactat |
416 |
Q |
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| T |
503155 |
tatgaatggtgaagaatgtgtgtgtattatataacgactat |
503115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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