View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15022_high_9 (Length: 411)
Name: NF15022_high_9
Description: NF15022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15022_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 376
Target Start/End: Complemental strand, 40527861 - 40527486
Alignment:
| Q |
10 |
agatgaactgggtttacctgctgtccctcgggcatccctacgcggttaaagaatgctttttatttcatcagcgtagctggtgcatacacaagcaagacct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40527861 |
agatgaactgggtttacctgctgtccctcgggcatccctacgtggttaaagaatgctttttatttcatcagcgtagctggtgcatacacaagcaagacct |
40527762 |
T |
|
| Q |
110 |
tgtaaagttgtgcagaacttgacaacattgattgattaatactgtggtttaattggcaaacatttaagaacttggtagttatgatcagagt--------- |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40527761 |
tgtaaagttgtgcagaacttgacaacattgattgattaatactgtggtttaattggcaaacatttaagaacttggtagttatgatcagagtaaactatgt |
40527662 |
T |
|
| Q |
201 |
--aaaccttgttcataccaattttattttgtctgaatcctgatataaattttcacatttaataatttattaagtattatctaaaccctgagtgtgataag |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40527661 |
gtaaaccttgttcataccaattttattttgtctgaatcctgatataaattttcacatttaataatttattaagtattatctaaaccctgagtgtgatgag |
40527562 |
T |
|
| Q |
299 |
tcgtcaggaaatttcaacagaagtacgggtgattttgattttgtatgactctgtacattgaatttaccctgattgttg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40527561 |
tcgtcaggaaatttcaacagaagtacgggtgattttgattctgtatga--ctgtacattgaatttaccctgattgttg |
40527486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University