View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15022_low_11 (Length: 367)
Name: NF15022_low_11
Description: NF15022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15022_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 44632121 - 44632359
Alignment:
| Q |
11 |
ctgtggaagaagaacttgagaaggtttttatttttgttattacaattagtatttattgataaggtgaactgagggtttatgtaactttgaataacctcaa |
110 |
Q |
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| T |
44632121 |
ctgtggaagaagaacttgagaaggtttttatttttgttattacaattagtatttattgataaggtgaactgagggtttatgtaactttgaataacctcaa |
44632220 |
T |
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| Q |
111 |
caggctatgtcagcttatggatatgaaattgttcaaacactgattactgatatagagccagatgagcatgtgaagcgggctatgaatgaaatcaacgcag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44632221 |
caggctatgtcagcttatggatatgaaattgttcaaacactgattactgatatagagccagatgagcatgtgaagcgggctatgaatgaaatcaacgcag |
44632320 |
T |
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| Q |
211 |
gtannnnnnnnaagaccgtgagatgtccctacaacattg |
249 |
Q |
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||| |||||||||||||||||||||||||||| |
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| T |
44632321 |
gtattttttttaagaccgtgagatgtccctacaacattg |
44632359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 44653599 - 44653796
Alignment:
| Q |
11 |
ctgtggaagaagaacttgagaaggtttttatttttgttattacaattagtatttattgataaggtgaactgagggtttatgtaactttgaataacctcaa |
110 |
Q |
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|||||||||||||||||||||||||| || |||||||| | | || |||||||||||| ||||||||| || ||||||||||||||||| | ||||| |
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| T |
44653599 |
ctgtggaagaagaacttgagaaggttctt--ttttgtta---cgaatattatttattgatatggtgaactgtggatttatgtaactttgaatcatctcaa |
44653693 |
T |
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| Q |
111 |
caggctatgtcagcttatggatatgaaattgttcaaacactgattactgatatagagccagatgagcatgtgaagcgggctatgaatgaaatcaacgcag |
210 |
Q |
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| T |
44653694 |
caggctatgtcagcttatggatatgaaattgttcaaacactgattactgatatagagccagatgtccatgtgaagcgggctatgaatgaaatcaatgcag |
44653793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 44682608 - 44682804
Alignment:
| Q |
11 |
ctgtggaagaagaacttgagaaggtttttatttttgttattacaattagtatttattgataaggtgaactgagggtttatgtaactttgaataacctcaa |
110 |
Q |
| |
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|||||||||||||||||||||||||| || |||||||| | || |||||||||||| ||||||||| || ||||||||||||||||| | ||||| |
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| T |
44682608 |
ctgtggaagaagaacttgagaaggttctt--ttttgttacga----tattatttattgatatggtgaactgtggatttatgtaactttgaatcatctcaa |
44682701 |
T |
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| Q |
111 |
caggctatgtcagcttatggatatgaaattgttcaaacactgattactgatatagagccagatgagcatgtgaagcgggctatgaatgaaatcaacgcag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
44682702 |
caggctatgtcagcttatggatatgaaattgttcaaacactgattactgatatagagccagatgtccatgtgaagcgggctatgaatgaaatcaatgcag |
44682801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 44636768 - 44636572
Alignment:
| Q |
11 |
ctgtggaagaagaacttgagaaggtttttatttt--tgttattacaattagtatttattgataaggtgaactgagggtttatgtaactttgaataacctc |
108 |
Q |
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||||||||||||||||||||||||||||| | || | ||||||||||| |||| ||||||||||||||||||| |||||||||||||| || || |
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| T |
44636768 |
ctgtggaagaagaacttgagaaggtttttttgttgtttttattacaattttcatttgttgataaggtgaactgaggatttatgtaactttggatcgtctt |
44636669 |
T |
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| Q |
109 |
aacaggctatgtcagcttatggatatgaaattgttcaaacactgattactgatatagagccagatgagcatgtgaagcgggctatgaatgaaatcaa |
205 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
44636668 |
aacaggctatgtcagcttatggctatgaaattgttcaaacactgattgttgatatagagccagacgagcatgtgaaacgggctatgaatgaaatcaa |
44636572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 44692289 - 44692487
Alignment:
| Q |
11 |
ctgtggaagaagaacttgagaaggtttttatttttgttattacaattagtatttatt-------gataaggtgaactgagggtttatgtaactttgaata |
103 |
Q |
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||||||||||||||| |||||||||| || ||||||| |||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| |
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| T |
44692289 |
ctgtggaagaagaacgtgagaaggttctt--ttttgtt-ttacaattagtatttactatttcctgataaggtgaactgaggatttatataactttgaatc |
44692385 |
T |
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| Q |
104 |
acctcaacaggctatgtcagcttatggatatgaaattgttcaaacactgattactgatatagagccagatgagcatgtgaagcgggctatgaatgaaatc |
203 |
Q |
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| T |
44692386 |
gtcgcaacaggctatgtccgcttatggatatgaaattgttcaaacactgattactgatatagagccagatcagcatgtgaagacggccatgaatgaaatc |
44692485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 44632414 - 44632462
Alignment:
| Q |
304 |
ccaaaagaggtcaataagtgtttaaaacctacctgtttcctcttgatac |
352 |
Q |
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| T |
44632414 |
ccaaaagaggtcaataagtgtttaaaacctacctgtttcctcttgatac |
44632462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 25103633 - 25103560
Alignment:
| Q |
112 |
aggctatgtcagcttatggatatgaaattgttcaaacactgattactgatatagagccagatgagcatgtgaag |
185 |
Q |
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|||| |||||||||||||||||||| || ||||| || || ||| ||||| || |||||||||||||||||| |
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| T |
25103633 |
aggccatgtcagcttatggatatgagatagttcagactctcattgtggatattgaaccagatgagcatgtgaag |
25103560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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