View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15022_low_13 (Length: 331)
Name: NF15022_low_13
Description: NF15022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15022_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 27 - 314
Target Start/End: Complemental strand, 27718393 - 27718109
Alignment:
| Q |
27 |
caactgtttaaaaatatataatatagctacannnnnnnagaggctaatatagctacatatttatcgatcatacttttatttacgttatatcatacttaat |
126 |
Q |
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| T |
27718393 |
caactgtttaaaaatatataatatagctacatttttttagaggctaatatagctacatatttatcgatcatacttttatttacgttatatcatacttaat |
27718294 |
T |
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| Q |
127 |
ctattatccaccctctta-tcttgtagtaaatatttaactgcatgtgagtaaaaaagactaacatgcatgattccctaatggaaaatgcatgggaagagg |
225 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| ||||||||||||||||||||| |
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| T |
27718293 |
ctattatccaccctcttaatcttgtagtaaatatttaactgcatgggagtaaaaaagattaacatgg----ttccctagtggaaaatgcatgggaagagg |
27718198 |
T |
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| Q |
226 |
acaacacataaaagtttgtaacttatttaaaagtacaaaccttggcaacttggtgggaagcttctttaggaaaaaggtaagccaaacct |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27718197 |
acaacacataaaagtttgtaacttatttaaaagtacaaaccttggcaacttggtgggaagcttctttaggaaaaaggtaagccaaacct |
27718109 |
T |
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