View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15022_low_15 (Length: 318)
Name: NF15022_low_15
Description: NF15022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15022_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 39307364 - 39307065
Alignment:
| Q |
1 |
tgagatttctataataaaaatacccataaggttgctaccaaaaactactataaatacagtattcattgcaatgcattgtatatcacaaatacaagaattg |
100 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39307364 |
tgagatttctgtaataaaaatacgcataaggttgctaccaaaaactactataaatacagtattcattgcaatgcattatatatcacaaatacaagaattg |
39307265 |
T |
|
| Q |
101 |
caaaaggaaagaaaaaggcacagnnnnnnnntgtctgatgaatgcaaaggtaaggtgttataagcctaatataatatgtttaaattaaatggtttgtgaa |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39307264 |
caaaaggaaagaaaaaggcacagaaaaaaa-tgtctgatgaatgcaaaggtaaggtgttataagcctaatataatatgtttaaattaaacggtttgtgaa |
39307166 |
T |
|
| Q |
201 |
atattaattataatttgatggttgaattaatcaatattgtgttctcaggtaagaactcatggccagagttggttggagtagaaggaaaggtagcagaagc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39307165 |
atattaattataatttgatggttgaattaatcaatattgtgttctcaggtaagaactcatggccagagttggttggagtggaaggaaaggtagcagaagc |
39307066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 181 - 301
Target Start/End: Original strand, 33400136 - 33400256
Alignment:
| Q |
181 |
taaattaaatggtttgtgaaatattaattataatttgatggttgaattaatcaatattgtgttctcaggtaagaactcatggccagagttggttggagta |
280 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
33400136 |
taaattaaatggttagtgaaattttaattataatttgatggttgaattaatcaatattgtgttctcaggtaagagctcatggccagaattggttggagtg |
33400235 |
T |
|
| Q |
281 |
gaaggaaaggtagcagaagct |
301 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
33400236 |
gaaggaaaggtagcagaagct |
33400256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 33356177 - 33356295
Alignment:
| Q |
1 |
tgagatttctataataaaaatacccataaggttgctaccaaaaactactataaatacagtattcattgcaatgcattgtatatcacaaa--tacaagaat |
98 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| | |||||| |
|
|
| T |
33356177 |
tgagatttctgtaataaaaaaacccataaggttgctaccaaaaactactataaatacactattcattgcaatgcattatatatcacaaacccataagaat |
33356276 |
T |
|
| Q |
99 |
tgcaaaaggaaagaaaaag |
117 |
Q |
| |
|
|||| || ||||||||||| |
|
|
| T |
33356277 |
tgcagaaagaaagaaaaag |
33356295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 181 - 301
Target Start/End: Original strand, 33381872 - 33381996
Alignment:
| Q |
181 |
taaattaaatggtttgtgaaatattaattataatttgatggttgaattaatcaatat----tgtgttctcaggtaagaactcatggccagagttggttgg |
276 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
33381872 |
taaattaaatggtttgtgaaattttaattataatttgatggtttaatgaatcaatatattgtgtgtgctcaggtaagagttcatggccagaattggttgg |
33381971 |
T |
|
| Q |
277 |
agtagaaggaaaggtagcagaagct |
301 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
33381972 |
agttgaaggaaaggtagcagaagct |
33381996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 189 - 301
Target Start/End: Original strand, 33356380 - 33356496
Alignment:
| Q |
189 |
atggtttgtgaaatattaattataatttgatggttgaattaatcaatat----tgtgttctcaggtaagaactcatggccagagttggttggagtagaag |
284 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
33356380 |
atggtttgtgaaattttaaatataatttgatggttgaatgaatcaatatattgtgtgtgttcaggtaagagttcatggccagagttggttggagtggaag |
33356479 |
T |
|
| Q |
285 |
gaaaggtagcagaagct |
301 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
33356480 |
gaaaggtagcagaagct |
33356496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 33399930 - 33400027
Alignment:
| Q |
25 |
cataaggttgctaccaaaaactactataaatacagtattcattgcaatgcattgtatatcacaaatacaagaattgcaaaaggaaagaaaaaggcaca |
122 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| || |||||||||||||| ||||||||||| | ||||||||||||| |||||||||||||||| |
|
|
| T |
33399930 |
cataaggtttccaccaaaaactactataaatacatcatacattgcaatgcattatatatcacaaacaaaagaattgcaaaaagaaagaaaaaggcaca |
33400027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 33381667 - 33381746
Alignment:
| Q |
37 |
accaaaaactactataaatacagtattcattgcaatgcattgtatatcacaaatacaagaattgcaaaaggaaagaaaaa |
116 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||||||| ||||||| ||| ||||||||||||||| |||| ||||| |
|
|
| T |
33381667 |
accaaaaactactatatatacaccttacattgcaatgcattatatatcaaaaacacaagaattgcaaaaagaaaaaaaaa |
33381746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University