View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15022_low_2 (Length: 475)
Name: NF15022_low_2
Description: NF15022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15022_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 181 - 463
Target Start/End: Original strand, 36756153 - 36756426
Alignment:
| Q |
181 |
gtagaaaatgactataagttaataactaacatatgtatgtatgtgttgtaacgttgaattgactcccttcaaattagattcgttaattagtc-cctaatt |
279 |
Q |
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| T |
36756153 |
gtagaaaaggactataagttaataactaacatatgtatgt----gttgtaacgttgaattgactcccttcaaattagattcgttaattagtctcctaatt |
36756248 |
T |
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| Q |
280 |
gcatgatgatttgagaaaatgtaaacaagacccaagaagagtggtcaattacgtaacaattctt---atatttggatttattagac-aagttcaaaattg |
375 |
Q |
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| T |
36756249 |
gcatgatgatttgagaaaatgtaaacaagacccaaaa---gtggtcaattacgtaacaattcttcttatatttggattta---gactaagttcaaaattg |
36756342 |
T |
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| Q |
376 |
actccaaataagcaagcagccgtgtttggtttttcatttcttccagaagcaagcaagcaagcaactgttcccatcacacacacgccta |
463 |
Q |
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| T |
36756343 |
actccaaacaagcaagcagccgtgtttggtttttcatttcttccag----aagcaagcaagcaactgttcccatcacacacacgccta |
36756426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 36755881 - 36755937
Alignment:
| Q |
131 |
gtagattttaaaagtatccattttgttggatcagatgaaaatggtgatttgtagaaa |
187 |
Q |
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| T |
36755881 |
gtagattttaaaagtatccattttgttggataagatgaaaatggtggtttgtagaaa |
36755937 |
T |
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