View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15022_low_5 (Length: 454)
Name: NF15022_low_5
Description: NF15022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15022_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 4 - 398
Target Start/End: Complemental strand, 30278722 - 30278329
Alignment:
| Q |
4 |
gataagaagaccaattctcattcaatctatcttgtaacattgctaatttcgaaaaatttctttcagctctaatnnnnnnnnnnccgatttaatcaaaagn |
103 |
Q |
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| T |
30278722 |
gataagaagaccaattctcattcaatctatcttgtaacattgctaatttcgaaaaatttctttcagctctaataaaaaaaaaac-gatttaatcaaaaga |
30278624 |
T |
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| Q |
104 |
nnnnnncggatttagacattaacaatcgttataggtatcatcatatcatagttcatagtattctaatggcaatatatacatttgaaaaagaaaacaatct |
203 |
Q |
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| T |
30278623 |
aaaaaacggatttagacattagcaatcgttataggtatcatcatatcatagttcatagtattctaatggcaatatatacatttgaaaaagaaaacaatct |
30278524 |
T |
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| Q |
204 |
ttcaatgatgaactaagacacgcttctttcgcaaaagaaaaatggaacttctaaggaaagtagtgtagtacaagaaaggtggcctgatatatatgtaaaa |
303 |
Q |
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| T |
30278523 |
ttcaatgatgaactaagacacgcttctttcgcaaaagaaaaatggaacttctaaggaaagtagtgtagtacaaggaaggtggcctgatatatatgtaaaa |
30278424 |
T |
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| Q |
304 |
gtagatcgggttgtaacctccgaacttgagcgatcgagagttatggcccaaaaggttcggttcgtaactcccagtataggcattcttgagctttt |
398 |
Q |
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| T |
30278423 |
gtagatcgggttgtaacctccgaacttgagcgatcgagagttatggcccaaaaggttcggttcgtaactcccagtataggcattcttgagctttt |
30278329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 439
Target Start/End: Complemental strand, 30278306 - 30278277
Alignment:
| Q |
410 |
gaggcctatagagcaaacagagatcatatt |
439 |
Q |
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| T |
30278306 |
gaggcctatagagcaaacagagatcatatt |
30278277 |
T |
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