View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15022_low_8 (Length: 436)

Name: NF15022_low_8
Description: NF15022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15022_low_8
NF15022_low_8
[»] chr7 (8 HSPs)
chr7 (13-304)||(25121661-25121951)
chr7 (35-259)||(43782903-43783127)
chr7 (16-303)||(6216367-6216658)
chr7 (120-212)||(24251621-24251713)
chr7 (120-211)||(16732115-16732206)
chr7 (120-211)||(17710249-17710340)
chr7 (134-234)||(44481283-44481383)
chr7 (120-211)||(29200869-29200960)
[»] chr3 (11 HSPs)
chr3 (15-287)||(8751620-8751890)
chr3 (16-203)||(29678432-29678619)
chr3 (163-304)||(21789644-21789785)
chr3 (138-303)||(5925598-5925756)
chr3 (22-139)||(13646839-13646957)
chr3 (120-232)||(26046870-26046982)
chr3 (120-212)||(42340190-42340282)
chr3 (140-210)||(48227570-48227640)
chr3 (247-303)||(13646954-13647010)
chr3 (120-209)||(53497214-53497303)
chr3 (134-296)||(646999-647161)
[»] scaffold0004 (2 HSPs)
scaffold0004 (13-170)||(243686-243843)
scaffold0004 (230-303)||(245208-245281)
[»] chr4 (7 HSPs)
chr4 (13-156)||(30546685-30546826)
chr4 (120-212)||(49951495-49951587)
chr4 (120-209)||(32576964-32577053)
chr4 (120-211)||(37245766-37245857)
chr4 (134-212)||(51734885-51734963)
chr4 (140-193)||(35750862-35750915)
chr4 (120-232)||(26422495-26422607)
[»] chr2 (7 HSPs)
chr2 (224-304)||(29994516-29994596)
chr2 (120-212)||(18344207-18344299)
chr2 (134-213)||(34695816-34695895)
chr2 (134-213)||(34718228-34718307)
chr2 (120-205)||(9710137-9710222)
chr2 (140-212)||(88761-88833)
chr2 (120-160)||(1417946-1417986)
[»] chr6 (4 HSPs)
chr6 (120-303)||(15605816-15605999)
chr6 (120-209)||(15053091-15053180)
chr6 (120-212)||(14680344-14680436)
chr6 (248-300)||(22534611-22534663)
[»] chr5 (5 HSPs)
chr5 (120-212)||(4268281-4268373)
chr5 (163-291)||(12717734-12717862)
chr5 (163-237)||(12778958-12779032)
chr5 (120-212)||(15988662-15988754)
chr5 (120-208)||(27292616-27292704)
[»] chr1 (4 HSPs)
chr1 (120-212)||(5609521-5609613)
chr1 (120-212)||(4395340-4395432)
chr1 (140-212)||(17371650-17371722)
chr1 (120-212)||(44527435-44527527)
[»] chr8 (3 HSPs)
chr8 (120-209)||(11870446-11870535)
chr8 (120-208)||(3606656-3606744)
chr8 (120-212)||(40588643-40588735)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 25121951 - 25121661
Alignment:
Q  13 agcaaaggatggcacaacgtcatttttgagtcggattcgtgcactcttgtgaattctctattgtctcagcgtagaggagtttctgaattttgtatgctac 112  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  25121951 agcaaaggatggcacaatgtcatttttgagtcggattcgtgcactcttgtgaattctctagtgtctaagcgtagcggagtttctgaattttgtatgctac 25121852  T
Q  113 tttccgttattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||    
T  25121851 tttccgttattaattatcaactatctctacattccaacttcgaggtgacatttattc-acgacaaacgaatatggttgctcactctttagctagggcggc 25121753  T
Q  213 taattcatggactagtcaccatgttcttgagttctctcctttttgtattgaatctttctttattaatgatatgagttaattttgcttttgtc 304  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25121752 caattcatggactagtcaccatgttcttgagttctctcctttttgtatcgaatctttctttattaatgatatgagttaattttgcttttgtc 25121661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 35 - 259
Target Start/End: Complemental strand, 43783127 - 43782903
Alignment:
Q  35 tttttgagtcggattcgtgcactcttgtgaattctctattgtctcagcgtagaggagtttctgaattttgtatgctactttccgttattaattatcaact 134  Q
    |||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||||||||||||  ||||||||||| ||||||||| | || ||    
T  43783127 tttttgagtcggattcgtgcatgcttgtgaattctccattgtctcagcgtagcggagtttctgaattttacatgctactttcggttattaataaccagct 43783028  T
Q  135 atctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggctaattcatggactagtcaccat 234  Q
    |||||||||||||||||||||||| |  |||||||| ||||||||  |||| ||||||||||||||||| ||||||||   ||||||| |||||||||||    
T  43783027 atctctacattccaacttcgaggtaaagtttattcggcgacaagcggatatagttgctcactctttagcgagggcggccggttcatgggctagtcaccat 43782928  T
Q  235 gttcttgagttctctcctttttgta 259  Q
    ||| ||| ||| |||||||||||||    
T  43782927 gtttttgggttttctcctttttgta 43782903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 6216367 - 6216658
Alignment:
Q  16 aaaggatggcacaacgtcatttttgagtcggattcgtgcactcttgtgaattctctattgtctcagcgtagaggagtttctgaattttgtatgctac--- 112  Q
    |||||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||||| ||| ||||  ||||||||||||||| ||||||||       
T  6216367 aaaggatggcacaatgtcattttttagtcggattcatgtactcttgtgaattctctattgtcacagtgtagcagagtttctgaattttatatgctacgta 6216466  T
Q  113 -tttccgttattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcgg 211  Q
     |||| |||||||   |  || ||||| ||||||||||||| |||||||  |||||| | |||||||| || ||  |||||||||||||| ||||| |||    
T  6216467 ctttcggttattaggaactaattatctatacattccaactttgaggtgaagtttatttgtcgacaagcgaacatacttgctcactctttatctaggacgg 6216566  T
Q  212 ctaattcatggactagtcaccatgttcttgagttctctcctttttgtattgaatctttctttattaatgatatgagttaattttgcttttgt 303  Q
        ||||||| ||| |||||||||| | ||| | ||||||||||||||||||  |||| |||||||| |||||||||||||||||||||||    
T  6216567 acggttcatgggctaatcaccatgttttcgagatttctcctttttgtattgaacatttccttattaataatatgagttaattttgcttttgt 6216658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 24251621 - 24251713
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggc 212  Q
    ||||| ||||||  ||||| |||||||||||||||||||||  ||| || |  ||||||| || |||||||||||  ||||||||||||||||    
T  24251621 tattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggc 24251713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 16732115 - 16732206
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcgg 211  Q
    ||||| ||||||  ||||| |||||||||||||||||||||  ||| || |  ||||||| || |||||||||||  |||||||||||||||    
T  16732115 tattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcgg 16732206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 17710249 - 17710340
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcgg 211  Q
    ||||| ||||||  ||||| |||||||||||||||||||||  ||| || |  ||||||| || |||||||||||  |||||||||||||||    
T  17710249 tattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcgg 17710340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 44481283 - 44481383
Alignment:
Q  134 tatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggctaattcatggactagtcacca 233  Q
    ||||| |||||| ||||||||||||||  ||| || |  ||||||| || |||||||||||  ||||||||||||||||   ||| ||| ||||||||||    
T  44481283 tatctttacatttcaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcacca 44481382  T
Q  234 t 234  Q
    |    
T  44481383 t 44481383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 29200960 - 29200869
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcgg 211  Q
    ||||| ||||||  ||||| |||||||||||||||||||||  ||| || |  ||||| | || |||||||||||  |||||||||||||||    
T  29200960 tattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagctagggcgg 29200869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 8751890 - 8751620
Alignment:
Q  15 caaaggatggcacaacgtcatttttgagtcggattcgtgcactcttgtgaattctctattgtctcagcgtagaggagtttctgaattttgtatgctactt 114  Q
    ||||||||||||||| || |||||| |||||||||| ||||||||||| ||||||||||| ||||||||||  |||||||||||||||| ||||||||||    
T  8751890 caaaggatggcacaatgtaattttttagtcggattcatgcactcttgttaattctctattatctcagcgtatcggagtttctgaattttatatgctactt 8751791  T
Q  115 tccgttattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggcta 214  Q
    || ||||||| ||| | |||||||||||||| ||||||||||||||  |||||| | | ||||| |||||||||||||||||||||||||| ||| ||      
T  8751790 tcggttattagttaccgactatctctacatttcaacttcgaggtgaagtttatt-ggcaacaagaaaatatggttgctcactctttagcta-ggcagcag 8751693  T
Q  215 attcatggactagtcaccatgttcttgagttctctcctttttgtattgaatctttctttattaatgatatgag 287  Q
       ||||| ||||||||| |||| ||||||| |||||||||||| |||||   ||| ||||||||||||||||    
T  8751692 gagcatgggctagtcaccgtgtttttgagttttctcctttttgttttgaactcttccttattaatgatatgag 8751620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 29678619 - 29678432
Alignment:
Q  16 aaaggatggcacaacgtcatttttgagtcggattcgtgcactcttgtgaattctctattgtctcagcgtagaggagtttctgaattttgtatgctacttt 115  Q
    |||||||||||||| ||||||||| | || |||| ||| |||||||||| |||  |||| |||||||||||||||||||||||||||| |||||||||||    
T  29678619 aaaggatggcacaatgtcattttttaatcagatttgtgtactcttgtgatttcattattatctcagcgtagaggagtttctgaattttatatgctacttt 29678520  T
Q  116 ccgttattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagc 203  Q
    | ||||||||| | ||||||||||||||||| |||||||||||||  |||||||| | ||||||| ||||| ||||||||| ||||||    
T  29678519 cggttattaataaccaactatctctacattctaacttcgaggtgaagtttattcggctacaagcagatatgattgctcactttttagc 29678432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 163 - 304
Target Start/End: Complemental strand, 21789785 - 21789644
Alignment:
Q  163 tttattcgacgacaagcaaatatggttgctcactctttagctagggcggctaattcatggactagtcaccatgttcttgagttctctcctttttgtattg 262  Q
    |||||||  ||||||||  | ||||||||||||||||||||||| |||||   |||||   ||||||||||| || ||||||| |||||||| |||||||    
T  21789785 tttattcagcgacaagcggacatggttgctcactctttagctagagcggccggttcatttgctagtcaccatatttttgagttttctcctttatgtattg 21789686  T
Q  263 aatctttctttattaatgatatgagttaattttgcttttgtc 304  Q
    || ||||| |||||||||||||||||||||||||||||||||    
T  21789685 aacctttccttattaatgatatgagttaattttgcttttgtc 21789644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 5925756 - 5925598
Alignment:
Q  138 tctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggctaattcatggactagtcaccatgtt 237  Q
    ||||| || ||||||||||||||  |||||||| |||||| | |||||| |||||||||||||| |||| || ||     ||||| ||||||||||| ||    
T  5925756 tctacttttcaacttcgaggtgaagtttattcggcgacaaacgaatatgattgctcactctttacctagagcagc-----catgggctagtcaccatatt 5925662  T
Q  238 cttgagttctctcctttttgtattgaatctttctttattaatgatatgagttaattttgcttttgt 303  Q
      ||||||   | |||||||||||||| | ||| |||||||||||| |||||||||||||||||||    
T  5925661 --tgagtttctttctttttgtattgaacccttccttattaatgatacgagttaattttgcttttgt 5925598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 13646839 - 13646957
Alignment:
Q  22 tggcacaacgtcatttttgagtcggattcgtgcactcttgtgaattctctattgtctcagcgtagaggagtttctgaattttgtatgctac-tttccgtt 120  Q
    |||||||| ||| ||||| ||||| | | |||||||| ||||||||||||||||||||| ||||   ||||| ||||||||| |||||||| |||  |||    
T  13646839 tggcacaatgtcttttttcagtcgaaattgtgcactcctgtgaattctctattgtctcatcgtaacagagttcctgaattttatatgctactttttggtt 13646938  T
Q  121 attaattatcaactatctc 139  Q
    |||||| ||||| ||||||    
T  13646939 attaataatcaattatctc 13646957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 26046870 - 26046982
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggctaattca 219  Q
    ||||| ||||||  ||||| ||||||| ||||| |||||||| ||| || |  ||||||| || |||||||||||  ||||||||||||||||| ||||     
T  26046870 tattatttatcagttatctttacattctaactttgaggtgacgtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcttattct 26046969  T
Q  220 tggactagtcacc 232  Q
    ||| |||||||||    
T  26046970 tgggctagtcacc 26046982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 42340282 - 42340190
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggc 212  Q
    ||||| |||||| |||||| |||||||||||||||||||||  ||| || |  ||||||| || |||||||||||| |||||| |||||||||    
T  42340282 tattatttatcagctatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcacactttagatagggcggc 42340190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 48227570 - 48227640
Alignment:
Q  140 tacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcg 210  Q
    ||||||||||||||||||||| |||| || |  ||||||||||||||||| ||||  ||||||||||||||    
T  48227570 tacattccaacttcgaggtgaaatttgttaggagacaagcaaatatggttcctcatactttagctagggcg 48227640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 13646954 - 13647010
Alignment:
Q  247 tctcctttttgtattgaatctttctttattaatgatatgagttaattttgcttttgt 303  Q
    ||||||||||||||| ||  |||| | ||||||||||||||||||||||||||||||    
T  13646954 tctcctttttgtattaaacttttcctaattaatgatatgagttaattttgcttttgt 13647010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 53497214 - 53497303
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggc 209  Q
    ||||||||||||  ||||| |||||||||||||| ||||||  |||||| |  ||||||| || |||| ||||||  |||||||||||||    
T  53497214 tattaattatcagttatctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatactttagctagggc 53497303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 296
Target Start/End: Complemental strand, 647161 - 646999
Alignment:
Q  134 tatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggctaattcatggactagtcacca 233  Q
    ||||| ||||||||||||||||||||| |||| || |  ||||| | || |||||||||||  |||||| |||||||||   ||| ||||||| |||||     
T  647161 tatctttacattccaacttcgaggtgaaatttgttaggagacaaacgaacatggttgctcatactttagttagggcggcctgttcttggactaatcaccg 647062  T
Q  234 tgttcttgagttctctcctttttgtattgaatctttctttattaatgatatgagttaattttg 296  Q
    | || |||| || | || || ||||||||||  ||  || |||||| |||  |||||||||||    
T  647061 tatttttgaattttatctttcttgtattgaacattggttgattaataataatagttaattttg 646999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 243686 - 243843
Alignment:
Q  13 agcaaaggatggcacaacgtcatttttgagtcggattcgtgcactcttgtgaattctctattgtctcagcgtagaggagtttctgaattttgtatgctac 112  Q
    |||||| |||||||||  ||||| ||||||||||||||||||| ||||||||||||||||| |||| || |||| |||||||||||||||| ||||||||    
T  243686 agcaaatgatggcacagtgtcatctttgagtcggattcgtgcaatcttgtgaattctctatcgtcttagtgtagtggagtttctgaattttatatgctac 243785  T
Q  113 tttccgttattaattatcaactatctctacattccaacttcgaggtgacatttattcg 170  Q
    |||| ||||||||  | ||||||||| || ||| ||||||||||||||  ||||||||    
T  243786 tttcagttattaaagaccaactatctatagatttcaacttcgaggtgaattttattcg 243843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 245208 - 245281
Alignment:
Q  230 accatgttcttgagttctctcctttttgtattgaatctttctttattaatgatatgagttaattttgcttttgt 303  Q
    |||||||| ||||||| |||||||||||||| ||| | ||  ||||||||||||||||||||||| ||||||||    
T  245208 accatgtttttgagttttctcctttttgtatcgaaccctttcttattaatgatatgagttaatttagcttttgt 245281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 30546826 - 30546685
Alignment:
Q  13 agcaaaggatggcacaacgtcatttttgagtcggattcgtgcactcttgtgaattctctattgtctcagcgtagaggagtttctgaattttgtatgctac 112  Q
    ||||||||||| ||||| ||||||||| ||||| ||||||||| ||||||||||||||| |||||||| | ||  |||||||||||||||  |||| |||    
T  30546826 agcaaaggatgacacaatgtcattttttagtcgaattcgtgcagtcttgtgaattctctgttgtctcaacataatggagtttctgaattt--tatgttac 30546729  T
Q  113 tttccgttattaattatcaactatctctacattccaacttcgag 156  Q
    |||| ||  ||||| | ||||||| |||||||| ||||||||||    
T  30546728 tttctgtccttaataaccaactatttctacatttcaacttcgag 30546685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 49951495 - 49951587
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggc 212  Q
    ||||| ||||||  ||||| |||||||||||||||||||||  ||| || |  ||||||| || |||||||||||  ||||||||||||||||    
T  49951495 tattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggc 49951587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 32577053 - 32576964
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggc 209  Q
    ||||| ||||||  ||||| |||||||||||||||||||||  ||| || |  ||||||| || |||||||||||  |||||||||||||    
T  32577053 tattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggc 32576964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 37245857 - 37245766
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcgg 211  Q
    ||||| ||||||  ||||| |||||||||||||||||||||  ||| || |  ||||| | || |||||||||||  |||||||||||||||    
T  37245857 tattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaatcgaacatggttgctcatactttagctagggcgg 37245766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 51734963 - 51734885
Alignment:
Q  134 tatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggc 212  Q
    ||||| |||||||||||||||||||||  ||| || |  ||||||  || |||||||||||  ||||||||||||||||    
T  51734963 tatctttacattccaacttcgaggtgaagtttgttaggtgacaagtgaacatggttgctcatactttagctagggcggc 51734885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 35750862 - 35750915
Alignment:
Q  140 tacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctc 193  Q
    |||||| |||||| |||||||  ||||||||| ||||| |||||||||||||||    
T  35750862 tacatttcaactttgaggtgaagtttattcgaggacaaacaaatatggttgctc 35750915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 26422607 - 26422495
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggctaattca 219  Q
    ||||| ||||||  ||||| |||||||||||||||||||||  ||| || |  ||||  |||| |||||||||||  ||||| ||| ||||||  ||||     
T  26422607 tattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacagacaaacatggttgctcatactttaactacggcggcctattct 26422508  T
Q  220 tggactagtcacc 232  Q
    ||| |||||||||    
T  26422507 tgggctagtcacc 26422495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 224 - 304
Target Start/End: Complemental strand, 29994596 - 29994516
Alignment:
Q  224 ctagtcaccatgttcttgagttctctcctttttgtattgaatctttctttattaatgatatgagttaattttgcttttgtc 304  Q
    ||||||||||| || ||||||| ||| |||| ||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  29994596 ctagtcaccatatttttgagttttcttctttatgtattgaacctttccttattaatgatatgagttaattttgcttttgtc 29994516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 18344299 - 18344207
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggc 212  Q
    ||||||||||||  ||||| |||||||||||||| |||||| |||| || |  || |||| || |||||||||||  ||||||||||||||||    
T  18344299 tattaattatcagttatctttacattccaacttcaaggtgaaatttgttaggagataagcgaacatggttgctcatactttagctagggcggc 18344207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 34695895 - 34695816
Alignment:
Q  134 tatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggct 213  Q
    ||||| |||||||||||||||||||||  ||| || |  ||||||| || |||||||||||  |||||||||||||||||    
T  34695895 tatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggct 34695816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 34718307 - 34718228
Alignment:
Q  134 tatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggct 213  Q
    ||||| |||||||||||||||||||||  ||| || |  ||||||| || |||||||||||  |||||||||||||||||    
T  34718307 tatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggct 34718228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 9710137 - 9710222
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagcta 205  Q
    ||||| ||||||  ||||| |||||||||||||||||||||  ||| || |  ||||||| || |||||||||||  |||||||||    
T  9710137 tattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagcta 9710222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 88761 - 88833
Alignment:
Q  140 tacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggc 212  Q
    |||||||||||||| | ||||  |||||| |  ||||||| || |||||||||||  ||||||||||||||||    
T  88761 tacattccaacttcaacgtgaagtttatttggagacaagcgaacatggttgctcatactttagctagggcggc 88833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 1417986 - 1417946
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtga 160  Q
    ||||| ||||||| ||||| |||||||||||||||||||||    
T  1417986 tattatttatcaattatctttacattccaacttcgaggtga 1417946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 303
Target Start/End: Complemental strand, 15605999 - 15605816
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggctaattca 219  Q
    ||||| ||||||  ||||| |||||||||||||||||||||  ||| || |  ||||||| || |||||||||||  ||||||||||||||||| ||||     
T  15605999 tattatttatcagttatctttacattccaacttcgaggtgaattttgttagcagacaagcgaacatggttgctcatgctttagctagggcggcttattct 15605900  T
Q  220 tggactagtcaccatgttcttgagttctctcctttttgtattgaatctttctttattaatgatatgagttaattttgcttttgt 303  Q
    ||| ||||||||||| ||  | | |  | ||||| ||||||||||  ||  || ||||||||||  ||||||||||||||||||    
T  15605899 tgggctagtcaccatatttattattcttatccttcttgtattgaacattggttaattaatgataatagttaattttgcttttgt 15605816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 15053180 - 15053091
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggc 209  Q
    ||||| ||||||| ||| | |||||||||| ||||||||||  ||| || || |||||||||| ||| |||||||  |||||||||||||    
T  15053180 tattatttatcaattatatttacattccaatttcgaggtgaagtttgttagaagacaagcaaacatgattgctcatactttagctagggc 15053091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 14680344 - 14680436
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggc 212  Q
    ||||| ||||||  ||||| |||||||||||||||||||||  ||| || |  |||| || || |||||||||||  ||||| ||||||||||    
T  14680344 tattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacatgcgaacatggttgctcatactttaactagggcggc 14680436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 22534611 - 22534663
Alignment:
Q  248 ctcctttttgtattgaatctttctttattaatgatatgagttaattttgcttt 300  Q
    |||||| ||||||||||||||| || |||||| |||| |||||| ||||||||    
T  22534611 ctccttattgtattgaatcttttttaattaataatatcagttaaatttgcttt 22534663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 4268281 - 4268373
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggc 212  Q
    |||||||| |||  ||||| |||||||||||||| ||||||  |||||| |  ||||||| || |||||||||||  ||||| ||||||||||    
T  4268281 tattaattctcagttatctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggttgctcatactttatctagggcggc 4268373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 291
Target Start/End: Original strand, 12717734 - 12717862
Alignment:
Q  163 tttattcgacgacaagcaaatatggttgctcactctttagctagggcggctaattcatggactagtcaccatgttcttgagttctctcctttttgtattg 262  Q
    ||||||||||||||||| ||||||||||||||  | ||||| ||||||||   ||| ||  ||||||||||||||  |||| | ||||||  ||||| ||    
T  12717734 tttattcgacgacaagcgaatatggttgctcataccttagcgagggcggcccgttcttgatctagtcaccatgtttgtgagatttctcctacttgtaatg 12717833  T
Q  263 aatctttctttattaatgatatgagttaa 291  Q
    ||   || || ||||||||||| ||||||    
T  12717834 aacaattattgattaatgatattagttaa 12717862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 12778958 - 12779032
Alignment:
Q  163 tttattcgacgacaagcaaatatggttgctcactctttagctagggcggctaattcatggactagtcaccatgtt 237  Q
    ||||||||||||||||| ||||||||||||||  | ||||| ||||||||   ||| ||  ||||||||||||||    
T  12778958 tttattcgacgacaagcgaatatggttgctcataccttagcgagggcggcccgttcttgatctagtcaccatgtt 12779032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 15988754 - 15988662
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggc 212  Q
    ||||| ||||||  ||||| |||||| ||||||||||||||  ||| || |  |||||||| | |||||||||||  ||||||||| ||||||    
T  15988754 tattatttatcagttatctttacattacaacttcgaggtgaagtttgttaggagacaagcagacatggttgctcatactttagctaaggcggc 15988662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 27292616 - 27292704
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctaggg 208  Q
    ||||||||||||  ||||| |||||||||||||| | ||||  |||||  |  ||||||| || |||||||||||  ||||||||||||    
T  27292616 tattaattatcagttatctttacattccaacttcaaagtgaagtttatcaggagacaagcgaacatggttgctcatactttagctaggg 27292704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 5609521 - 5609613
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggc 212  Q
    ||||| ||||||  ||||| |||||||||||||||||||||  ||| || |  ||||||| || |||||||||||  | ||||||||||||||    
T  5609521 tattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatacattagctagggcggc 5609613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 4395340 - 4395432
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggc 212  Q
    ||||| ||||||  ||||| |||||| |||||| |||||||  ||| || |  ||||||| || |||||||||||  ||||||||||||||||    
T  4395340 tattatttatcagttatctttacatttcaactttgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggc 4395432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 17371650 - 17371722
Alignment:
Q  140 tacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggc 212  Q
    |||||||||||||| ||||||  |||||| |  ||||||| |||||||| |||||  | ||||||||||||||    
T  17371650 tacattccaacttcaaggtgaagtttattaggagacaagcgaatatggtcgctcataccttagctagggcggc 17371722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 44527435 - 44527527
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggc 212  Q
    |||||||||| |  ||||| |||||||||||||| ||||||  |||||| |  ||||||| || |||| ||||||  ||||| ||||||||||    
T  44527435 tattaattattagttatctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatactttaactagggcggc 44527527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 11870446 - 11870535
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggc 209  Q
    ||||| ||||||  ||||| ||||||| |||||||||||||  ||| || |  ||||||| || |||||||||||  |||||||||||||    
T  11870446 tattatttatcagttatctttacattctaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggc 11870535  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 3606744 - 3606656
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctaggg 208  Q
    ||||| ||||||  ||||| ||||||| |||||||||||||  ||| || |  ||||||| |||||||||| |||  ||||||||||||    
T  3606744 tattatttatcagttatctttacattctaacttcgaggtgaagtttgttaggagacaagcgaatatggttgttcatactttagctaggg 3606656  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 40588735 - 40588643
Alignment:
Q  120 tattaattatcaactatctctacattccaacttcgaggtgacatttattcgacgacaagcaaatatggttgctcactctttagctagggcggc 212  Q
    ||||| ||||||  ||||| |||||||||||||||||||||  ||| || |  ||||||| || ||| |||| ||  ||||||||||||||||    
T  40588735 tattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatgattgcacatactttagctagggcggc 40588643  T

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