View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15023_high_12 (Length: 330)

Name: NF15023_high_12
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15023_high_12
NF15023_high_12
[»] chr4 (18 HSPs)
chr4 (1-304)||(8447650-8447953)
chr4 (1-303)||(8443450-8443752)
chr4 (1-232)||(10460468-10460699)
chr4 (1-220)||(10482036-10482255)
chr4 (5-237)||(10571276-10571508)
chr4 (6-64)||(6392835-6392893)
chr4 (12-220)||(10467898-10468105)
chr4 (21-183)||(10464158-10464323)
chr4 (187-237)||(8437307-8437357)
chr4 (5-158)||(6388157-6388310)
chr4 (3-71)||(837780-837848)
chr4 (3-58)||(829595-829650)
chr4 (265-302)||(8437400-8437437)
chr4 (5-69)||(6372451-6372515)
chr4 (97-232)||(6392664-6392799)
chr4 (43-155)||(10475127-10475239)
chr4 (256-303)||(10460379-10460426)
chr4 (256-303)||(10553812-10553859)
[»] chr3 (4 HSPs)
chr3 (1-232)||(25915293-25915524)
chr3 (1-232)||(25901275-25901506)
chr3 (16-117)||(36340073-36340174)
chr3 (256-295)||(25915563-25915602)
[»] chr1 (1 HSPs)
chr1 (5-216)||(50645485-50645696)
[»] chr2 (3 HSPs)
chr2 (4-121)||(25377028-25377145)
chr2 (254-303)||(25376861-25376910)
chr2 (14-118)||(20975515-20975619)
[»] chr7 (14 HSPs)
chr7 (15-218)||(26256632-26256835)
chr7 (1-107)||(22100461-22100567)
chr7 (21-115)||(15571911-15572005)
chr7 (20-118)||(16839396-16839494)
chr7 (20-118)||(16846479-16846577)
chr7 (1-107)||(22063610-22063716)
chr7 (5-118)||(1985955-1986068)
chr7 (5-109)||(22070077-22070181)
chr7 (1-109)||(22080834-22080942)
chr7 (1-121)||(24002153-24002273)
chr7 (142-174)||(26237515-26237547)
chr7 (1-118)||(19344571-19344688)
chr7 (3-71)||(660845-660913)
chr7 (1-121)||(24010337-24010457)
[»] scaffold0867 (1 HSPs)
scaffold0867 (1-107)||(4665-4771)
[»] chr6 (7 HSPs)
chr6 (5-118)||(6935218-6935331)
chr6 (5-118)||(6947880-6947993)
chr6 (16-117)||(5978985-5979086)
chr6 (16-117)||(33568942-33569043)
chr6 (7-118)||(6954521-6954632)
chr6 (16-122)||(33576123-33576229)
chr6 (42-118)||(24254463-24254539)
[»] chr5 (1 HSPs)
chr5 (28-214)||(23086643-23086829)
[»] scaffold0707 (1 HSPs)
scaffold0707 (16-117)||(5336-5437)
[»] chr8 (1 HSPs)
chr8 (39-71)||(42846459-42846491)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 8447650 - 8447953
Alignment:
Q  1 tctgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaa 100  Q
    |||||||| | |||||||||||||||||||||||||  |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8447650 tctgataattaattttaaataattgaatccaagactcatgaactccgaaatccttcatctgccaaataaaatgatgagttctcttgaaatcatatgaaaa 8447749  T
Q  101 acaaagacagtccatcaaaactgcaagtgtcggctgatgacatggcacctcatcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagaga 200  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| |    
T  8447750 acaaagacagtccatcaaaactgcaagtgtcggatgatgtcatggcacctcatcaaaaccctgaggcaacaacagctgagtgtgtgactcggtggagata 8447849  T
Q  201 tcaagcgaaacaatcacatattcatcaacagttataccattcaaatatatgtcatagtaattgcgaagggccaaccagttaatagtaccattcaaattca 300  Q
     ||||||||||||||| |||||||||||||||||||||||||||||| ||| || |||||||||||| ||||||||||||||||||||||||||||||||    
T  8447850 gcaagcgaaacaatcatatattcatcaacagttataccattcaaataaatgacaaagtaattgcgaaaggccaaccagttaatagtaccattcaaattca 8447949  T
Q  301 caca 304  Q
    ||||    
T  8447950 caca 8447953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 8443450 - 8443752
Alignment:
Q  1 tctgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaa 100  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  8443450 tctgataactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatctgccaaataacataatgagttctcttgaaatcataagaaaa 8443549  T
Q  101 acaaagacagtccatcaaaactgcaagtgtcggctgatgacatggcacctcatcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagaga 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||| |||||||||| ||||||||||| | ||||||||||||||    
T  8443550 acaaagacagtccatcaaaactgcaagtgttggctgatgacatggccccttatcaacaccctgaggcaacagcagctgagtgtgtgactcggtggagaga 8443649  T
Q  201 tcaagcgaaacaatcacatattcatcaacagttataccattcaaatatatgtcatagtaattgcgaagggccaaccagttaatagtaccattcaaattca 300  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||||| ||||| ||||||| || | ||||||||| ||||||||||||||||||| ||    
T  8443650 tcaagcgaaactatcacatattcgacaacagttataccattcaaatatttgtcaaagtaatttcgcacggccaaccaattaatagtaccattcaaatgca 8443749  T
Q  301 cac 303  Q
    |||    
T  8443750 cac 8443752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 10460699 - 10460468
Alignment:
Q  1 tctgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaa 100  Q
    |||||||||| ||  ||||||||||| |||| |||| |||||||||||||| ||||||||| || || |||  |||||||| ||| |||||||| || ||    
T  10460699 tctgataactaataataaataattgagtccatgactcgtgaactccaaaattcttcatctgtcatatcacaaaatgagttcccttaaaatcataagagaa 10460600  T
Q  101 acaaagacagtccatcaaaactgcaagtgtcggctgatgacatggcacctcatcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagaga 200  Q
    |||||||||||||||||||||  ||||||| ||||||| || |||||||||||| |||||  ||||||||||||||||||||| |  ||| | |||||||    
T  10460599 acaaagacagtccatcaaaaccacaagtgttggctgataacgtggcacctcatcgaaaccccgaggcaacaacagctgagtgtatgtctcagaggagaga 10460500  T
Q  201 tcaagcgaaacaatcacatattcatcaacagt 232  Q
    || |  ||||||||||||||||  ||||||||    
T  10460499 tccaatgaaacaatcacatatttctcaacagt 10460468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 10482255 - 10482036
Alignment:
Q  1 tctgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaa 100  Q
    |||||||| | ||||||||||||||||||||||||   |||||||||||||||||||| ||||| ||||||  || ||||  ||   ||||||    |||    
T  10482255 tctgataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaataagtttcctcataatcatgaccaaa 10482156  T
Q  101 acaaagacagtccatcaaaactgcaagtgtcggctgatgacatggcacctcatcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagaga 200  Q
    ||||||||| ||||||||||| |||||  | || ||||||| || ||||| || ||||||  |||| | |||||  ||||||| |  ||| || ||||||    
T  10482155 acaaagacaatccatcaaaaccgcaagctttggttgatgacgtgacaccttattaaaaccccgaggtagcaacaattgagtgtatgtctcagttgagaga 10482056  T
Q  201 tcaagcgaaacaatcacata 220  Q
    ||||| |||| |||||||||    
T  10482055 tcaagtgaaagaatcacata 10482036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 10571276 - 10571508
Alignment:
Q  5 ataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaa 104  Q
    |||||| |||||||| || |||||||||||||  ||||||||||||||  |||| | ||| | |||| ||||| ||| |||||||||||   |||| |||    
T  10571276 ataactaattttaaacaactgaatccaagactcttgaactccaaaatctgtcattttccataaaacaagatgacttcccttgaaatcatgacaaaagcaa 10571375  T
Q  105 agacagtccatcaaaactgcaagtgtcggctgatgacatggcacctcatcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagagatcaa 204  Q
    |||||||  || |||||  |||| || || |||  ||| | |||||| ||||||||  |||| | |||||  | ||||| | |||| || ||||||||||    
T  10571376 agacagttgattaaaaccacaagcgttggttgaacacaagacacctcgtcaaaaccccgaggaagcaacaattcagtgtatgactcagttgagagatcaa 10571475  T
Q  205 gcgaaacaatcacatattcatcaacagttatac 237  Q
    | ||||||||||||||||  |||||||| ||||    
T  10571476 gtgaaacaatcacatattgctcaacagtaatac 10571508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 6392893 - 6392835
Alignment:
Q  6 taacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgcca 64  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  6392893 taactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatttgcca 6392835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 10468105 - 10467898
Alignment:
Q  12 attttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaagacagt 111  Q
    ||||||||||||||||||||||||   |||||||||||||||||||| ||||| ||||||  || ||||  ||   ||||||     ||||||||||| |    
T  10468105 attttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaataagtttcctcataatcatgaccgaaacaaagacaat 10468006  T
Q  112 ccatcaaaactgcaagtgtcggctgatgacatggcacctcatcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagagatcaagcgaaac 211  Q
    |||||||||| ||| |  | |||||||||| || ||||| || ||||||| |||| | |||||  ||||||| |  ||| || ||||||||||| ||||     
T  10468005 ccatcaaaaccgcaggctttggctgatgacgtgacaccttat-aaaacctcgaggtagcaacaattgagtgtatgtctcagttgagagatcaagtgaaag 10467907  T
Q  212 aatcacata 220  Q
    |||||||||    
T  10467906 aatcacata 10467898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 10464323 - 10464158
Alignment:
Q  21 aattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaagacagtccatcaaaa 120  Q
    ||||||||||||||||  ||| | |||||||||||||| ||||| ||||||  ||| ||  | | |||||||||  ||||||||||||| ||||||||||    
T  10464323 aattgaatccaagactcctgatccccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaaaa 10464224  T
Q  121 ctgcaagtgtcggctgatgacatggcacc---tcatcaaaaccttgaggcaacaacagctgagtgt 183  Q
    |  ||||  | ||||||| |  |||||||   |||||||||||  |||||| |||||| |||||||    
T  10464223 ccacaagccttggctgataatctggcacctcatcatcaaaaccccgaggcagcaacagttgagtgt 10464158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 8437307 - 8437357
Alignment:
Q  187 actcggtggagagatcaagcgaaacaatcacatattcatcaacagttatac 237  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||||||    
T  8437307 actcggtggagagatcaagcgaaacaatgacaatttcatcaacagttatac 8437357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 6388310 - 6388157
Alignment:
Q  5 ataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaa 104  Q
    |||||| ||||| |||| ||||||||||||||  ||  | |||||||||||||| ||||| ||||||  |||||||  ||  |||||||   ||||||||    
T  6388310 ataactaatttttaatagttgaatccaagactcttgggcgccaaaatccttcatttgccatataacagaatgagtttcctcaaaatcatgacaaaaacaa 6388211  T
Q  105 agacagtccatcaaaactgcaagtgtcggctgatgacatggcacctcatcaaaa 158  Q
    |||||| ||||||||||  ||||  | ||||||| || ||| |||| |||||||    
T  6388210 agacagcccatcaaaacaacaagctttggctgataacgtggaaccttatcaaaa 6388157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 837848 - 837780
Alignment:
Q  3 tgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataaca 71  Q
    ||||| || |||||||||||||||||||||||||  ||||| ||||||| |||||| ||||| ||||||    
T  837848 tgatagctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataaca 837780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 829595 - 829650
Alignment:
Q  3 tgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcat 58  Q
    |||||||| |||||||||||||||| ||||||||  ||||| ||||||||||||||    
T  829595 tgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcat 829650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 8437400 - 8437437
Alignment:
Q  265 gaagggccaaccagttaatagtaccattcaaattcaca 302  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  8437400 gaagggccaaccagttaatagtaccattcaaatacaca 8437437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 6372515 - 6372451
Alignment:
Q  5 ataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataa 69  Q
    |||||| |||||| ||||||||||| ||||||  ||||||||| |||||||||| ||||| ||||    
T  6372515 ataactaattttatataattgaatctaagactcttgaactccagaatccttcatttgccatataa 6372451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 6392799 - 6392664
Alignment:
Q  97 aaaaacaaagacagtccatcaaaactgcaagtgtcggctgatgacatggcacctca-tcaaaaccttgaggcaacaacagctgagtgtctaactcggtgg 195  Q
    ||||||||||| |||||||||||||  ||||| |||| |||| ||||||||||| | | ||||| |||||||| |||||  | ||||| |  ||| ||||    
T  6392799 aaaaacaaagaaagtccatcaaaaccacaagtttcggttgataacatggcaccttattaaaaacattgaggcagcaacaatttagtgtatgtctcagtgg 6392700  T
Q  196 agagatcaagcgaaacaatcacatattcatcaacagt 232  Q
    ||||| | || |||| |||||||||||  ||||||||    
T  6392699 agaga-cgagtgaaagaatcacatattgctcaacagt 6392664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 10475239 - 10475127
Alignment:
Q  43 ctccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaagacagtccatcaaaactgcaagtgtcggctgatgaca 142  Q
    |||||||||||||||| ||||| ||||||  ||| ||  | | |||||||||  ||||||||||||| |||||||||||  ||||  | ||||||| |      
T  10475239 ctccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaaaaccacaagccttggctgataatt 10475140  T
Q  143 tggcacctcatca 155  Q
    |||||||||||||    
T  10475139 tggcacctcatca 10475127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 10460426 - 10460379
Alignment:
Q  256 agtaattgcgaagggccaaccagttaatagtaccattcaaattcacac 303  Q
    |||||| | |||||||||||||| |||||||||||||||||| |||||    
T  10460426 agtaatcgtgaagggccaaccagctaatagtaccattcaaatacacac 10460379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 10553812 - 10553859
Alignment:
Q  256 agtaattgcgaagggccaaccagttaatagtaccattcaaattcacac 303  Q
    |||||| |||||||| |||||||||||| ||||||||||||| |||||    
T  10553812 agtaatcgcgaagggtcaaccagttaattgtaccattcaaatacacac 10553859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 25915293 - 25915524
Alignment:
Q  1 tctgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaa 100  Q
    |||||||||| ||||| || ||||||||||||||||  ||||||| |||||||||||| | ||| ||||||  |||  ||| |||||||||||    |||    
T  25915293 tctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaa 25915392  T
Q  101 acaaagacagtccatcaaaactgcaagtgtcggctgatgacatggcacctcatcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagaga 200  Q
    ||||||  |||||||||||||  ||| ||| ||||||  || ||||||||| ||||||||  |||||| ||||| |||||||| | |||| ||||| |||    
T  25915393 acaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacaga 25915492  T
Q  201 tcaagcgaaacaatcacatattcatcaacagt 232  Q
    ||||||||||||||||||||||  ||||||||    
T  25915493 tcaagcgaaacaatcacatattgctcaacagt 25915524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 25901275 - 25901506
Alignment:
Q  1 tctgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaa 100  Q
    |||||||||| ||||| || ||||||||||||||||  ||||||| |||||||||||| | ||| ||||||  |||  ||| |||||||||||    |||    
T  25901275 tctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaa 25901374  T
Q  101 acaaagacagtccatcaaaactgcaagtgtcggctgatgacatggcacctcatcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagaga 200  Q
    ||||||  |||||||||||||  ||| ||| ||||||  || ||||||||| ||||||||  |||| | ||||| |||||||| | |||| ||||| |||    
T  25901375 acaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacaga 25901474  T
Q  201 tcaagcgaaacaatcacatattcatcaacagt 232  Q
    ||||||||||||||||||||||  ||||||||    
T  25901475 tcaagcgaaacaatcacatattgctcaacagt 25901506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 36340174 - 36340073
Alignment:
Q  16 taaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaagacagtccat 115  Q
    ||||||| ||| |||||||||  |||  |||||| |||||||||||||| || |||   | ||||||||||||||| | |||||| ||||| ||||||||    
T  36340174 taaataactgagtccaagactcttgagatccaaactccttcatctgccatatcacaaattcagttctcttgaaatcgtgtgaaaagcaaaggcagtccat 36340075  T
Q  116 ca 117  Q
    ||    
T  36340074 ca 36340073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 25915563 - 25915602
Alignment:
Q  256 agtaattgcgaagggccaaccagttaatagtaccattcaa 295  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  25915563 agtaattgcgaagtgccaaccagttaatagtaccactcaa 25915602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 50645485 - 50645696
Alignment:
Q  5 ataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaa 104  Q
    |||||| |||||||||||||||||||||||||  |||||||||||||||||||| ||||| ||||||  |||||||| ||  |||||||   ||| ||||    
T  50645485 ataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatgagttccctcaaaatcatgaaaaatacaa 50645584  T
Q  105 agacagtccatcaaaactgcaagtgtcggctgatgacatggcacctcatcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagagatcaa 204  Q
    |||  |||| | |||||   |||||| ||||||| || ||| | ||  | ||||||  |||||| |||||| ||||||| |  |||||||||||||||||    
T  50645585 agattgtcccttaaaaccttaagtgttggctgataacgtggaagcttgtgaaaaccccgaggcagcaacagttgagtgtatgtctcggtggagagatcaa 50645684  T
Q  205 gcgaaacaatca 216  Q
    | |||| |||||    
T  50645685 gtgaaagaatca 50645696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 25377145 - 25377028
Alignment:
Q  4 gataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaaca 103  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||||||||||||  ||| ||||||  |||  ||  ||  |||||||   |||||||    
T  25377145 gataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatggttttcctccaaatcatgacaaaaaca 25377046  T
Q  104 aagacagtccatcaaaac 121  Q
    |||||||||| |||||||    
T  25377045 aagacagtccgtcaaaac 25377028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 25376910 - 25376861
Alignment:
Q  254 atagtaattgcgaagggccaaccagttaatagtaccattcaaattcacac 303  Q
    ||||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  25376910 atagtaattgcgaagggccaaccaggtaatagtaccactcaaatacacac 25376861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 20975619 - 20975515
Alignment:
Q  14 tttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaagacagtcc 113  Q
    |||||| |||||||||||||| |  | ||||||||| ||| |||| ||||| ||||||  |||| ||| |||| ||| || || |||||||||||||| |    
T  20975619 tttaaacaattgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaatgatttcccttggaataatgtgtaaaacaaagacagttc 20975520  T
Q  114 atcaa 118  Q
    |||||    
T  20975519 atcaa 20975515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 26256835 - 26256632
Alignment:
Q  15 ttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaagacagtcca 114  Q
    |||||||||||| |||||||||  ||||||||| | |||||||||||||| | ||||  || | ||  ||||  |||||  ||||||||||| || ||||    
T  26256835 ttaaataattgagtccaagactcttgaactccatactccttcatctgccataaaacaaaatcattttccttggtatcatgagaaaaacaaaggcattcca 26256736  T
Q  115 tcaaaactgcaagtgtcggctgatgacatggcacctcatcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagagatcaagcgaaacaat 214  Q
    |||||||   |||    ||||||  | ||||||||||||||||||||||||||| ||||| |||  ||| |  ||| || || ||||||||||||| |||    
T  26256735 tcaaaaccttaagaactggctgaacaaatggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaataat 26256636  T
Q  215 caca 218  Q
    ||||    
T  26256635 caca 26256632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 22100567 - 22100461
Alignment:
Q  1 tctgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaa 100  Q
    |||||||||| ||||| ||||| ||| |||||||||  ||||||||||| | |||||| ||||| |||| |  ||||||| | ||||||||||  |||||    
T  22100567 tctgataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaa 22100468  T
Q  101 acaaaga 107  Q
    |||||||    
T  22100467 acaaaga 22100461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 15571911 - 15572005
Alignment:
Q  21 aattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaagacagtccat 115  Q
    ||||||| ||||||||  | ||||||||| ||| |||| ||||| || |||  ||| |||| |||||||||||| |||||||||||||| |||||    
T  15571911 aattgaacccaagactcttcaactccaaactccctcatttgccacatgacaaaatgggttcccttgaaatcataagaaaaacaaagacaatccat 15572005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 16839396 - 16839494
Alignment:
Q  20 taattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaagacagtccatcaa 118  Q
    ||||||| |||||||||  ||||||||| ||||  |||||| ||| |||||| |||||||| |||| | | |||  ||||||||||| |||||||||||    
T  16839396 taattgagtccaagactcttgaactccataatctgtcatcttccatataacaagatgagttttcttaacaacatgagaaaaacaaaggcagtccatcaa 16839494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 16846479 - 16846577
Alignment:
Q  20 taattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaagacagtccatcaa 118  Q
    ||||||| |||||||||  ||||||||| ||||  |||||| ||| |||||| ||||||||  ||||| | |||  ||||||||||| |||||||||||    
T  16846479 taattgagtccaagactcttgaactccataatctgtcatcttccatataacaagatgagtttgcttgacaacatgagaaaaacaaaggcagtccatcaa 16846577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 22063716 - 22063610
Alignment:
Q  1 tctgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaa 100  Q
    |||||||||| ||||| ||||| ||| |||||||||  |||| |||||| |||||||| ||||| ||||||  |||||||   ||||||||||   ||||    
T  22063716 tctgataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagtttgtttgaaatcatgaaaaaa 22063617  T
Q  101 acaaaga 107  Q
    |||||||    
T  22063616 acaaaga 22063610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 1985955 - 1986068
Alignment:
Q  5 ataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaa 104  Q
    |||||| |||||||| |||||| ||||||| |  | ||| ||||| |||||||| ||||||| ||||  ||| ||| ||||||||||||| |||||| |     
T  1985955 ataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaatgggttttcttgaaatcataagaaaaatag 1986054  T
Q  105 agacagtccatcaa 118  Q
    || || ||||||||    
T  1986055 aggcaatccatcaa 1986068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 22070181 - 22070077
Alignment:
Q  5 ataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaa 104  Q
    |||||| ||||| |||||  || |||||||||  ||||||||||| | |||||| ||||| |||| |  ||||||||  ||||||||||  |||||||||    
T  22070181 ataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagttcgtttgaaatcatgagaaaaacaa 22070082  T
Q  105 agaca 109  Q
    |||||    
T  22070081 agaca 22070077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 22080942 - 22080834
Alignment:
Q  1 tctgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaa 100  Q
    |||||||||| ||||| |||||  || |||||||||  ||||||||||| | |||||| ||||| |||| |  |||||||   ||||||||||  |||||    
T  22080942 tctgataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagtttgtttgaaatcatgagaaaa 22080843  T
Q  101 acaaagaca 109  Q
    |||||||||    
T  22080842 acaaagaca 22080834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 24002273 - 24002153
Alignment:
Q  1 tctgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaa 100  Q
    |||||||||| || |||| ||||||| |||||||||  ||||||||  | |||||||| ||||| | ||||   | |||||||||| ||||||   ||||    
T  24002273 tctgataactaatcttaagtaattgagtccaagactcttgaactccgtactccttcatatgccataaaacaaattcagttctcttggaatcatgataaaa 24002174  T
Q  101 acaaagacagtccatcaaaac 121  Q
    ||||| || ||||||||||||    
T  24002173 acaaataccgtccatcaaaac 24002153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 26237547 - 26237515
Alignment:
Q  142 atggcacctcatcaaaaccttgaggcaacaaca 174  Q
    |||||||||||||||||||||||||||||||||    
T  26237547 atggcacctcatcaaaaccttgaggcaacaaca 26237515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 19344571 - 19344688
Alignment:
Q  1 tctgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaa 100  Q
    ||||| |||| |||||||  |||||| ||||||| |  | ||||||||| ||| |||||||||| ||||||  ||||||  |||||| ||  |  |||||    
T  19344571 tctgaaaactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaatgagtgttcttgagattgtgagaaaa 19344670  T
Q  101 acaaagacagtccatcaa 118  Q
    |||||| |||||||||||    
T  19344671 acaaaggcagtccatcaa 19344688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 660845 - 660913
Alignment:
Q  3 tgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataaca 71  Q
    |||||||| |||||||  |||||| |||||||||  | ||||| ||| |||||||||||||| ||||||    
T  660845 tgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataaca 660913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 24010457 - 24010337
Alignment:
Q  1 tctgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaa 100  Q
    |||||||||| || |||| ||||||| |||||||||  ||||| ||  | |||||||| ||||| | ||||   | |||||||||| ||||||   ||||    
T  24010457 tctgataactaatcttaagtaattgagtccaagactcttgaaccccgtactccttcatatgccataaaacaaattcagttctcttggaatcatgataaaa 24010358  T
Q  101 acaaagacagtccatcaaaac 121  Q
    ||||| || ||||||||||||    
T  24010357 acaaataccgtccatcaaaac 24010337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 4665 - 4771
Alignment:
Q  1 tctgataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaa 100  Q
    |||||||||| ||||| ||||| ||| |||||||||  ||||||||||| | |||||| ||||| |||| |  ||||||| | ||||||||||  |||||    
T  4665 tctgataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaa 4764  T
Q  101 acaaaga 107  Q
    |||||||    
T  4765 acaaaga 4771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 6935218 - 6935331
Alignment:
Q  5 ataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaa 104  Q
    |||||| |||||||  |||| | ||||||| |  ||||||||||| |||||||| ||||||||||||| ||| ||| |||| |||||||| |||||| |     
T  6935218 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacataatgggttttcttaaaatcataagaaaaatag 6935317  T
Q  105 agacagtccatcaa 118  Q
    || || ||||||||    
T  6935318 aggcaatccatcaa 6935331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 6947880 - 6947993
Alignment:
Q  5 ataacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaa 104  Q
    |||||| |||||||  |||||| ||||||| |  | ||||||||| |||||||| ||||||| ||||   || ||| |||||||||||| ||||||||||    
T  6947880 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaacaaagtgggttttcttgaaatcatgtgaaaaacaa 6947979  T
Q  105 agacagtccatcaa 118  Q
    || || ||||||||    
T  6947980 aggcaatccatcaa 6947993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 5979086 - 5978985
Alignment:
Q  16 taaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaagacagtccat 115  Q
    ||||||| ||| |||||||||  || |||||||| ||||||||| |||| ||||||   |  ||||||||||||||||  ||||| |||||||| |||||    
T  5979086 taaataactgagtccaagactcttggactccaaactccttcatcagccatataacaaattcggttctcttgaaatcatgcgaaaagcaaagacaatccat 5978987  T
Q  116 ca 117  Q
    ||    
T  5978986 ca 5978985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 33569043 - 33568942
Alignment:
Q  16 taaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaagacagtccat 115  Q
    ||||||| ||| ||||||||| |||||||||||| || ||||||| ||| || |||   | ||| ||||||||||| |  |||||||||| |||||||||    
T  33569043 taaataactgactccaagactcgtgaactccaaactcattcatcttccatatgacaaattcagtcctcttgaaatcgtgcgaaaaacaaaaacagtccat 33568944  T
Q  116 ca 117  Q
    ||    
T  33568943 ca 33568942  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 6954521 - 6954632
Alignment:
Q  7 aacttattttaaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaag 106  Q
    |||| |||||||  |||||| ||||||| |  | ||||||||| |||||||| ||||||||||||  ||| ||| | ||||||||||| || ||||| ||    
T  6954521 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagag 6954620  T
Q  107 acagtccatcaa 118  Q
     || ||||||||    
T  6954621 gcaatccatcaa 6954632  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 33576229 - 33576123
Alignment:
Q  16 taaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaagacagtccat 115  Q
    ||||||| ||| |||||||||  ||||||||||| |||||||||  ||| ||||||   | ||||| ||| ||||| |  ||||||||||| ||||||||    
T  33576229 taaataactgagtccaagactcttgaactccaaactccttcatcatccatataacaaattcagttcccttaaaatcgtgcgaaaaacaaaggcagtccat 33576130  T
Q  116 caaaact 122  Q
    || ||||    
T  33576129 cagaact 33576123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 24254463 - 24254539
Alignment:
Q  42 actccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaagacagtccatcaa 118  Q
    |||||||| |||  ||||||||| ||||||  |||||||||||||| ||  |  ||||||||||| |||||||||||    
T  24254463 actccaaattccgacatctgccatataacaaaatgagttctcttgatatagtgagaaaaacaaaggcagtccatcaa 24254539  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 23086829 - 23086643
Alignment:
Q  28 tccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaagacagtccatcaaaactgcaag 127  Q
    |||||||||  ||||||||||| |||||||||||||| ||||||   | | |  |||| |||||||  ||||| ||||| |||||| ||| |||   |||    
T  23086829 tccaagactcttgaactccaaactccttcatctgccatataacaaattcaatcgtcttaaaatcatgcgaaaagcaaaggcagtccttcagaacatgaag 23086730  T
Q  128 tgtcggctgatgacatggcacctcatcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagagatcaagcgaaacaat 214  Q
     |  |||||||    |||||||||||||||||||||||||| ||||| |||  ||| |  ||| || || |||||||||||||||||    
T  23086729 agatggctgatattctggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgatagatcaagcgaaacaat 23086643  T

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Target: scaffold0707 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 5437 - 5336
Alignment:
Q  16 taaataattgaatccaagacttgtgaactccaaaatccttcatctgccaaataacatgatgagttctcttgaaatcatatgaaaaacaaagacagtccat 115  Q
    ||||||| ||| ||||||||| |||||||||||| || ||||||| ||| || |||   | ||| ||||||||||| |  |||||||||| |||||||||    
T  5437 taaataactgactccaagactcgtgaactccaaactcattcatcttccatatgacaaattcagtcctcttgaaatcgtgcgaaaaacaaaaacagtccat 5338  T
Q  116 ca 117  Q
    ||    
T  5337 ca 5336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 42846459 - 42846491
Alignment:
Q  39 tgaactccaaaatccttcatctgccaaataaca 71  Q
    |||||||||||||||||||| ||||||||||||    
T  42846459 tgaactccaaaatccttcatttgccaaataaca 42846491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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