View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15023_high_13 (Length: 319)
Name: NF15023_high_13
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15023_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 17133908 - 17134020
Alignment:
| Q |
2 |
tttgggcatgtgtcggagcaatcacatcaaataggctgaaaaatggattttcgaatcagacaactaacaatgaattaaaacacaagaataggggttagga |
101 |
Q |
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| T |
17133908 |
tttggacatgtttcggagcaatcaaatcaaatagcctaaaaaatggattttcgaatcggacaactaacaatgaaataaaacacaagaataggggttagga |
17134007 |
T |
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| Q |
102 |
tggttcttaaatt |
114 |
Q |
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| T |
17134008 |
tggttcttaaatt |
17134020 |
T |
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Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 17134027 - 17134078
Alignment:
| Q |
179 |
cagtagatggggtatatgaggtgttcggattttatataatacatgaggtgtt |
230 |
Q |
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| T |
17134027 |
cagtagatggggtatatgaggtgttcggattttatataatacatgaggtgtt |
17134078 |
T |
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