View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15023_high_17 (Length: 284)

Name: NF15023_high_17
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15023_high_17
NF15023_high_17
[»] chr4 (28 HSPs)
chr4 (1-284)||(48876055-48876338)
chr4 (1-275)||(48886446-48886720)
chr4 (1-275)||(48870760-48871034)
chr4 (53-187)||(45365859-45365993)
chr4 (53-174)||(7790381-7790502)
chr4 (33-174)||(7771696-7771837)
chr4 (70-176)||(7773481-7773587)
chr4 (53-178)||(45384531-45384662)
chr4 (69-171)||(7237398-7237500)
chr4 (69-176)||(7765941-7766048)
chr4 (87-176)||(7786763-7786852)
chr4 (69-173)||(48147368-48147472)
chr4 (69-173)||(48156084-48156188)
chr4 (1-172)||(48734998-48735169)
chr4 (69-178)||(48903255-48903361)
chr4 (134-176)||(7878045-7878087)
chr4 (33-120)||(7878738-7878825)
chr4 (210-260)||(48705169-48705219)
chr4 (68-178)||(48899037-48899147)
chr4 (56-176)||(37826632-37826752)
chr4 (69-173)||(48864337-48864441)
chr4 (33-120)||(7908657-7908744)
chr4 (69-120)||(45371729-45371780)
chr4 (53-120)||(48853036-48853103)
chr4 (144-178)||(50669382-50669416)
chr4 (142-195)||(43596153-43596206)
chr4 (54-115)||(49038518-49038579)
chr4 (56-116)||(49043810-49043870)
[»] chr5 (4 HSPs)
chr5 (83-169)||(179364-179450)
chr5 (70-171)||(9120067-9120168)
chr5 (61-119)||(29688485-29688543)
chr5 (56-169)||(29712083-29712196)
[»] chr3 (4 HSPs)
chr3 (53-178)||(47451539-47451664)
chr3 (133-178)||(11024216-11024261)
chr3 (71-178)||(11015148-11015249)
chr3 (69-178)||(11005583-11005686)
[»] chr8 (6 HSPs)
chr8 (52-178)||(15349180-15349306)
chr8 (86-176)||(4962191-4962281)
chr8 (86-176)||(12195623-12195713)
chr8 (86-176)||(12440051-12440141)
chr8 (69-176)||(12200641-12200748)
chr8 (69-176)||(12445069-12445176)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 48876338 - 48876055
Alignment:
Q  1 tttttgtacagcacaatggggaaaaggactcgtcagaaatgtcatcaacggtaagaacatgagtatttgtccaagacgagttcactttgtatttgttcat 100  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||||  |||||    
T  48876338 tttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcat 48876239  T
Q  101 cacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaaaccacagttgtgaggatcatagttataa 200  Q
    |||||| ||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48876238 cacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccacagttgttaggatcatagttataa 48876139  T
Q  201 ttataataatcatctggcaaatgcatatcaaaaagttgcctttccgttaaagcaaaggcagggataacactcttttgtaaatca 284  Q
    || ||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| |||||||| ||||||||||||||    
T  48876138 ttgtaataatcatctggcaaatgcatatcaaaaagttgcctttcagtgaaatcaaaggcaaggataacattcttttgtaaatca 48876055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 48886720 - 48886446
Alignment:
Q  1 tttttgtacagcacaatggggaaaaggactcgtcagaaatgtcatcaacggtaagaacatgagtatttgtccaagacgagttcactttgtatttgttcat 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||||  |||||    
T  48886720 tttttgtacagcacaatggggaaaaggactcatcagaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcat 48886621  T
Q  101 cacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaaaccacagttgtgaggatcatagttataa 200  Q
    |||||| ||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48886620 cacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccacagttgttaggatcatagttataa 48886521  T
Q  201 ttataataatcatctggcaaatgcatatcaaaaagttgcctttccgttaaagcaaaggcagggataacactcttt 275  Q
    || |||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||    
T  48886520 ttgtaataatcatctggtaaaagcatatcaaaaagttgcctttccgttaaatcaaaggcaaggataacattcttt 48886446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 48871034 - 48870760
Alignment:
Q  1 tttttgtacagcacaatggggaaaaggactcgtcagaaatgtcatcaacggtaagaacatgagtatttgtccaagacgagttcactttgtatttgttcat 100  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||||  |||||    
T  48871034 tttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcat 48870935  T
Q  101 cacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaaaccacagttgtgaggatcatagttataa 200  Q
    |||||| ||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48870934 cacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccacagttgttaggatcatagttataa 48870835  T
Q  201 ttataataatcatctggcaaatgcatatcaaaaagttgcctttccgttaaagcaaaggcagggataacactcttt 275  Q
    || |||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||    
T  48870834 ttgtaataatcatctggtaaaagcatatcaaaaagttgcctttccgttaaatcaaaggcaaggataacattcttt 48870760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 53 - 187
Target Start/End: Original strand, 45365859 - 45365993
Alignment:
Q  53 aagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgaga 152  Q
    |||||| ||||| ||||||||||||||   |||||| ||||  ||||||||||||||||||||||||| || || ||||||||||||||| | ||||| |    
T  45365859 aagaacgtgagtctttgtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaa 45365958  T
Q  153 aattccccaaatacccacaaaccacagttgtgagg 187  Q
    ||||| |||||||||||||||||||| | ||||||    
T  45365959 aattctccaaatacccacaaaccacaatcgtgagg 45365993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 7790502 - 7790381
Alignment:
Q  53 aagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgaga 152  Q
    ||||||| |||| || ||||||||||| | |||||||||||  ||||||||||||||||||| ||||| || || ||||||| |||| |||| |||||||    
T  7790502 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatccttagcgcataaactgaga 7790403  T
Q  153 aattccccaaatacccacaaac 174  Q
    ||||| ||||||||||||||||    
T  7790402 aattctccaaatacccacaaac 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 174
Target Start/End: Complemental strand, 7771837 - 7771696
Alignment:
Q  33 tcagaaatgtcatcaacggtaagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataat 132  Q
    |||| |||| ||||||| | ||||||| |||| || ||||| ||||| | |||||||||||  ||||||||||||||| ||| ||||| || || |||||    
T  7771837 tcaggaatggcatcaacagaaagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataat 7771738  T
Q  133 ccatagcccatagactgagaaattccccaaatacccacaaac 174  Q
    || |||| |||| |||||||||||| ||||||||||||||||    
T  7771737 ccttagcgcataaactgagaaattctccaaatacccacaaac 7771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 7773481 - 7773587
Alignment:
Q  70 tccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccca 169  Q
    |||||||||| | |||||||||||  ||||||||||||||||||||||||| || |  || |||| ||||||||| ||| ||| |||| |||||||||||    
T  7773481 tccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccca 7773580  T
Q  170 caaacca 176  Q
    |||||||    
T  7773581 caaacca 7773587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 45384531 - 45384662
Alignment:
Q  53 aagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactg------tattatcattataatccatagcccataga 146  Q
    ||||||| |||| |||||||||||||| | |||||| ||||  ||||||||||||||||||||||      || ||| || ||||| |||||| || | |    
T  45384531 aagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaactgaaatattaatattatcataatgcatagctcaaaaa 45384630  T
Q  147 ctgagaaattccccaaatacccacaaaccaca 178  Q
    ||||||||||| ||||||||||||||||||||    
T  45384631 ctgagaaattctccaaatacccacaaaccaca 45384662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 7237398 - 7237500
Alignment:
Q  69 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 168  Q
    |||||| |||| | || ||||||||  ||||||||||||||| ||| ||||| || || |||||||  ||||||||||||||||||||| ||||||||||    
T  7237398 gtccaaaacgaatgcattttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctccaaataccc 7237497  T
Q  169 aca 171  Q
    |||    
T  7237498 aca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 7766048 - 7765941
Alignment:
Q  69 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 168  Q
    ||||| ||||| | |||||||||||  ||||||||||||||||||| ||||| || | ||  |||| || |||||| |||||||||||| ||| ||||||    
T  7766048 gtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgagaaattctccagataccc 7765949  T
Q  169 acaaacca 176  Q
    ||||||||    
T  7765948 acaaacca 7765941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 176
Target Start/End: Complemental strand, 7786852 - 7786763
Alignment:
Q  87 ttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaaacca 176  Q
    |||||||  ||||||||||||||||||| ||||| || | ||  |||| || |||||| |||||||||||||||| ||||||||||||||    
T  7786852 ttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgagaaattccccagatacccacaaacca 7786763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 48147368 - 48147472
Alignment:
Q  69 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 168  Q
    ||||||||||| | |||||||||||  ||||||||||||||||||||| |  |||  | || ||||||| ||  ||||||||||||||  ||||||||||    
T  48147368 gtccaagacgaatgcactttgtattctttcatcacccatatttcaactctgctattgtcatgatccatacccgttagactgagaaattgtccaaataccc 48147467  T
Q  169 acaaa 173  Q
    |||||    
T  48147468 acaaa 48147472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 48156084 - 48156188
Alignment:
Q  69 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 168  Q
    |||||||| || | ||||||||||| |||||||||||||||||||||| | | || |    |||| | |||||||| |||||||||||| ||||||||||    
T  48156084 gtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattagcccaatcaacagcccataaactgagaaattctccaaataccc 48156183  T
Q  169 acaaa 173  Q
    |||||    
T  48156184 acaaa 48156188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 48734998 - 48735169
Alignment:
Q  1 tttttgtacagcacaatggggaaaaggactcgtcagaaatgtcatcaacggtaagaacatgagtatttgtccaagacgagttcactttgtatttgttcat 100  Q
    |||||||||| || ||||||||||||  |||||  | | || ||||||| |  | | ||||||| || ||||||||||| |||||||||||||  |||||    
T  48734998 tttttgtacaacaaaatggggaaaagctctcgttgggagtgccatcaacagacacagcatgagttttagtccaagacgaattcactttgtattctttcat 48735097  T
Q  101 cacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaa 172  Q
    |  ||||||   ||||||||||| | || ||| ||||| | | | |||||||||||| ||||||||||||||    
T  48735098 cgtccatatcataactgtattattactaaaattcatagtcgaaaaactgagaaattctccaaatacccacaa 48735169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 48903361 - 48903255
Alignment:
Q  69 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 168  Q
    ||||||||| | | |||||||||||  ||||||||||||||||||| | |||||||    ||||||| ||||||||| || |||||||| ||||||||||    
T  48903361 gtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatc---gtaatccaaagcccataggctaagaaattctccaaataccc 48903265  T
Q  169 acaaaccaca 178  Q
    | ||| ||||    
T  48903264 ataaatcaca 48903255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 7878087 - 7878045
Alignment:
Q  134 catagcccatagactgagaaattccccaaatacccacaaacca 176  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  7878087 catagcccatagactgagaaattctccaaatacccacaaacca 7878045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 7878825 - 7878738
Alignment:
Q  33 tcagaaatgtcatcaacggtaagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtat 120  Q
    |||| |||| ||||||| | ||||||| |||| ||  ||||||| || | |||||||||||  |||||||||||||||||||||||||    
T  7878825 tcaggaatgacatcaaccgaaagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtat 7878738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 48705169 - 48705219
Alignment:
Q  210 tcatctggcaaatgcatatcaaaaagttgcctttccgttaaagcaaaggca 260  Q
    |||||||||||| ||||||||||||||| ||||||| ||||| ||||||||    
T  48705169 tcatctggcaaaagcatatcaaaaagttccctttccattaaatcaaaggca 48705219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 48899147 - 48899037
Alignment:
Q  68 tgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacc 167  Q
    ||||||||| || || ||||| ||||  ||||||||||||||||||||||||| || |  |||||    |||||||| ||||| ||| || ||||| |||    
T  48899147 tgtccaagaggattttactttatattctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacc 48899048  T
Q  168 cacaaaccaca 178  Q
    |||||||||||    
T  48899047 cacaaaccaca 48899037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 37826632 - 37826752
Alignment:
Q  56 aacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaat 155  Q
    |||| |||| || ||||||||||| | || ||||||||  |||||||||| || || || ||||| || || |    |||| ||||||||||| ||||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaat 37826731  T
Q  156 tccccaaatacccacaaacca 176  Q
    || ||||||||||||||||||    
T  37826732 tctccaaatacccacaaacca 37826752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 48864441 - 48864337
Alignment:
Q  69 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 168  Q
    ||||||||||| | |||||||||||  ||||||||||||||||||||  || ||||||    | || ||| ||||||||||| ||| || ||||| ||||    
T  48864441 gtccaagacgaatgcactttgtattctttcatcacccatatttcaacgatagtatcatatccacccctagaccatagactgataaactctccaaagaccc 48864342  T
Q  169 acaaa 173  Q
    |||||    
T  48864341 acaaa 48864337  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 7908744 - 7908657
Alignment:
Q  33 tcagaaatgtcatcaacggtaagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtat 120  Q
    |||| |||| ||||||| | ||||||| |||| ||  ||||||| || | |||||||||||  ||||||||||||||||||| |||||    
T  7908744 tcaggaatggcatcaacagaaagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaagtgtat 7908657  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 45371729 - 45371780
Alignment:
Q  69 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtat 120  Q
    ||||||||||| | |||||||||||  ||||| |||||||||||||||||||    
T  45371729 gtccaagacgaatgcactttgtattctttcataacccatatttcaactgtat 45371780  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 48853103 - 48853036
Alignment:
Q  53 aagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtat 120  Q
    ||||||| |||| || |||||||||||   |||||||||||  ||||| |||||||||||||||||||    
T  48853103 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtat 48853036  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 50669416 - 50669382
Alignment:
Q  144 agactgagaaattccccaaatacccacaaaccaca 178  Q
    |||||||||||||| ||||||||||||||||||||    
T  50669416 agactgagaaattctccaaatacccacaaaccaca 50669382  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 43596153 - 43596206
Alignment:
Q  142 atagactgagaaattccccaaatacccacaaaccacagttgtgaggatcatagt 195  Q
    ||||||| |||||||||||||||||||||| | |||| || | |||||||||||    
T  43596153 atagactaagaaattccccaaatacccacatatcacaatttttaggatcatagt 43596206  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 49038518 - 49038579
Alignment:
Q  54 agaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaac 115  Q
    |||||| |||| || ||||||||||| |  ||||||||||  ||||||||||||||||||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 49043810 - 49043870
Alignment:
Q  56 aacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaact 116  Q
    |||| |||| || ||||| ||||| | |||||||||||  |||||||||||||||||||||    
T  49043810 aacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaact 49043870  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 179450 - 179364
Alignment:
Q  83 cactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccca 169  Q
    |||||||||||  ||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||  |||||||||||    
T  179450 cactttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaataccca 179364  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 9120168 - 9120067
Alignment:
Q  70 tccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccca 169  Q
    ||||||| || | |||||||||||  ||||||||||||||||||||||||| || |  | ||||||||||||||| |||||||||||| |||||||||||    
T  9120168 tccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatatactgagaaattctccaaataccca 9120069  T
Q  170 ca 171  Q
    ||    
T  9120068 ca 9120067  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 29688543 - 29688485
Alignment:
Q  61 gagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgta 119  Q
    |||| |||||||||||||| | ||| |||||||| ||||||||||||||||||||||||    
T  29688543 gagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaactgta 29688485  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 29712083 - 29712196
Alignment:
Q  56 aacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaat 155  Q
    |||| |||| || |||||||| ||  |||| |||||||| | ||||||||||||||||||||||  || || ||   ||||| |||||||||||||| ||    
T  29712083 aacaagagtcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaactgtaccattatcatgtgccatatcccatagactgagacat 29712182  T
Q  156 tccccaaataccca 169  Q
     | | |||||||||    
T  29712183 cctctaaataccca 29712196  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 47451539 - 47451664
Alignment:
Q  53 aagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgaga 152  Q
    ||||||| |||| |||  ||||||||| || ||||||||||  ||||||||||||||||||||| ||| || || | |||||| | ||| |||||| |||    
T  47451539 aagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccagaacccttagactaaga 47451638  T
Q  153 aattccccaaatacccacaaaccaca 178  Q
    ||||| ||||||||||||||||||||    
T  47451639 aattctccaaatacccacaaaccaca 47451664  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 11024216 - 11024261
Alignment:
Q  133 ccatagcccatagactgagaaattccccaaatacccacaaaccaca 178  Q
    ||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  11024216 ccatagcccatagactgagaaattctccaaatatccacaaatcaca 11024261  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 11015148 - 11015249
Alignment:
Q  71 ccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccac 170  Q
    ||||||||| | |||||||||||  ||||| |||||||||||||||||   ||| |      |||||||||||||||| |||||||| ||||||| ||||    
T  11015148 ccaagacgaatgcactttgtattctttcataacccatatttcaactgttccatcct------ccatagcccatagacttagaaattctccaaatatccac 11015241  T
Q  171 aaaccaca 178  Q
    ||| ||||    
T  11015242 aaatcaca 11015249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 11005583 - 11005686
Alignment:
Q  69 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 168  Q
    ||||||||||| | |||||||||||  ||||| ||||||||||||| ||| | |||        |||||||||||||||| |||||||| ||||||| ||    
T  11005583 gtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatccc------ccatagcccatagactaagaaattctccaaatatcc 11005676  T
Q  169 acaaaccaca 178  Q
    ||||| ||||    
T  11005677 acaaatcaca 11005686  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 178
Target Start/End: Complemental strand, 15349306 - 15349180
Alignment:
Q  52 taagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgag 151  Q
    |||||||| || | ||||||||||| ||||||||||||||||  |||||||||||||||||||   ||| || |  ||||||| ||| ||| ||||| |     
T  15349306 taagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaagctatcattaggataatccgtagaccaaagactaaa 15349207  T
Q  152 aaattccccaaatacccacaaaccaca 178  Q
    |||||| ||||| ||||||||||||||    
T  15349206 aaattcgccaaagacccacaaaccaca 15349180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 4962191 - 4962281
Alignment:
Q  86 tttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaaacca 176  Q
    ||||||||  ||||||||||||||||||||| ||  ||    |||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  4962191 tttgtattctttcatcacccatatttcaactctacaattgcgataatccatgccccatagactgagaaattctccaaatacccacaaacca 4962281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 12195713 - 12195623
Alignment:
Q  86 tttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaaacca 176  Q
    ||||||||  |||||| ||||||||||||||||   || || | ||| ||||  |||||||||||||||||  ||||||||||||||||||    
T  12195713 tttgtattctttcatctcccatatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaacca 12195623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 12440141 - 12440051
Alignment:
Q  86 tttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaaacca 176  Q
    ||||||||  |||||| ||||||||||||||||   || || | ||| ||||  |||||||||||||||||  ||||||||||||||||||    
T  12440141 tttgtattctttcatctcccatatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaacca 12440051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 12200748 - 12200641
Alignment:
Q  69 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 168  Q
    |||||||||||   || ||||||| | |||||| ||||||||||||  || | || || | ||| ||||  ||||||||| |||||||| ||||||||||    
T  12200748 gtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaattctccaaataccc 12200649  T
Q  169 acaaacca 176  Q
    ||||||||    
T  12200648 acaaacca 12200641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 12445176 - 12445069
Alignment:
Q  69 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 168  Q
    |||||||||||   || ||||||| | |||||| ||||||||||||  || | || || | ||| ||||  ||||||||| |||||||| ||||||||||    
T  12445176 gtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaattctccaaataccc 12445077  T
Q  169 acaaacca 176  Q
    ||||||||    
T  12445076 acaaacca 12445069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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