View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15023_high_19 (Length: 277)
Name: NF15023_high_19
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15023_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 28122318 - 28122141
Alignment:
| Q |
9 |
agcaaaggagaagactgttggggccgcggtcgcctgtggtggtggtagcagtggttgttgggttagcccagatgaattaatgtggctttgtaagtaggag |
108 |
Q |
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| T |
28122318 |
agcaaaggagaagactgttggggccgcggtcgcctgtggtggtggtagcggtggttgttgggttagcccagatgaattaatgtggctttgtaagtaggag |
28122219 |
T |
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| Q |
109 |
agttcagcttgtaaactcatcacctgtgga--acagagtccaaaaacaactctaattattaaaacgttttacacatgc |
184 |
Q |
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| T |
28122218 |
agttcagcttgtaaactcatcacctgtggaacacagagtccaaaaaaaactctaattattaaaacgttttacacatgc |
28122141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 28122100 - 28122021
Alignment:
| Q |
199 |
ttatgatgttgcttt-gccacattgattttcaaaatatagaacttaacttgtatatactatcaatgtaaacaagttttac |
277 |
Q |
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| T |
28122100 |
ttatgatgttacttttgccacattgattttcaaaatatagaacttaacttgtatatactatcaatgtaaacaagttttac |
28122021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 13266190 - 13266233
Alignment:
| Q |
90 |
gtggctttgtaagtaggagagttcagcttgtaaactcatcacct |
133 |
Q |
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| T |
13266190 |
gtggccttgtaagtaggagagttctgcttgtaaactcatcacct |
13266233 |
T |
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