View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15023_high_2 (Length: 573)
Name: NF15023_high_2
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15023_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 24561488 - 24561877
Alignment:
| Q |
1 |
tctagtgttactggagcttgatgttccatattggaaagatgaagagttgagtgcaagcatttcttcgcgttttctcgaagtttctagagcttgtgcttct |
100 |
Q |
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| T |
24561488 |
tctagtgttactagagcttgatgttccatattggaaagatgatgagttaagtgcaagcatttcttcgcgttttctcgaagtttctagagcttgtgcttct |
24561587 |
T |
|
| Q |
101 |
tttagtctttttgcagctcctcctccgattggaagtgtattgctttcgagaattgctttcacgtcataacgagtcatgtcaaagtttgttacagcgttga |
200 |
Q |
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| T |
24561588 |
tttagtctttttgcagctcctcctccaattggcagtgtgttgctttcgagaatggctttcacgtcgtaacgagtcatgtcaaagtttgttacagcgttga |
24561687 |
T |
|
| Q |
201 |
gtcctctgaattttattgctgctatgtcgtatgcttctgcagcctcttcttcagtgcctgcggtaatttagtgaccataaataaaattaaaaagtaagtt |
300 |
Q |
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| T |
24561688 |
gtcctctgaattttattgctgctatgtcgtatgcttctgcagcctcttcttcagtgcctgtggtaatttagtgaccataaataaaattaaaaagtaagtt |
24561787 |
T |
|
| Q |
301 |
gaattacaatatagtgtgaggttgagttaatgatttaatttgtatgtacttagagcgcataactattttacacgtgcatctaattatatcttatgattta |
400 |
Q |
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| T |
24561788 |
gaattaca--atagtgtgaggttgagttaatgatttaatttgtatgt----------------tattttacacgtgcatctaattatatcttatgattta |
24561869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 24561960 - 24562101
Alignment:
| Q |
423 |
atatttggttaaaattttggaccaaatacaccattttttgttgaattacttttgcttataatttagaacatagaaagtatatgtactataaaagtgtttc |
522 |
Q |
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| T |
24561960 |
atatttggttaaaattttggaccaaatgcatcattttttgttgaattacttttgcttataatttaaaacatagaaagtatatgtactataaaaatgtttc |
24562059 |
T |
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| Q |
523 |
acatcgttggcgcatacaaattaaatttttgtttagaataat |
564 |
Q |
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| T |
24562060 |
atattgttggtgcatacaaattaaatttttgtttagaataat |
24562101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 53233820 - 53233918
Alignment:
| Q |
161 |
acgtcataacgagtcatgtcaaagtttgttacagcgttgagtcctctgaattttattgctgctatgtcgtatgcttctgcagcctcttcttcagtgcct |
259 |
Q |
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| T |
53233820 |
acgtcgtaccgactcatgtcaaaatttgttactgcatttagtcctctaaatttgattgctgcaatatcatacgcttctgcagcttcttcttgagtgcct |
53233918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 70 - 249
Target Start/End: Original strand, 41963684 - 41963863
Alignment:
| Q |
70 |
ttttctcgaagtttctagagcttgtgcttcttttagtctttttgcagctcctcctccgattggaagtgtattgctttcgagaattgctttcacgtcataa |
169 |
Q |
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|||||| |||| ||||||||||||||||||||||| |||||||||||| |||||||| ||||| || || | ||||| ||||| ||||||||||| ||| |
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| T |
41963684 |
ttttctagaagattctagagcttgtgcttcttttaatctttttgcagcacctcctcctattgggagagtgatactttcaagaatcgctttcacgtcgtaa |
41963783 |
T |
|
| Q |
170 |
cgagtcatgtcaaagtttgttacagcgttgagtcctctgaattttattgctgctatgtcgtatgcttctgcagcctcttc |
249 |
Q |
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| T |
41963784 |
cgattcatgtcaaagtttgttactgcgtttaatcctctgaatttgattgcagctatgtcatatgcttctgcagcctcttc |
41963863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 30618307 - 30618392
Alignment:
| Q |
174 |
tcatgtcaaagtttgttacagcgttgagtcctctgaattttattgctgctatgtcgtatgcttctgcagcctcttcttcagtgcct |
259 |
Q |
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|||||||||||||||| || || | ||||||||||||||||||||||| | || ||||| ||||| |||||||||| ||||||| |
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| T |
30618307 |
tcatgtcaaagtttgtaactgcactcagtcctctgaattttattgctgccacatcatatgcctctgctgcctcttcttgagtgcct |
30618392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 461
Target Start/End: Complemental strand, 22547574 - 22547534
Alignment:
| Q |
421 |
atatatttggttaaaattttggaccaaatacaccatttttt |
461 |
Q |
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| T |
22547574 |
atatatttggttcaaattttagaccaaatacatcatttttt |
22547534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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