View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15023_high_24 (Length: 227)
Name: NF15023_high_24
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15023_high_24 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 12185101 - 12185328
Alignment:
| Q |
1 |
agataatgaatacaattgaacaaacgaaagccattagtgacgtgaacaacaccagttacaatcgaaagctcacatttacattcttttcataagctattat |
100 |
Q |
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| T |
12185101 |
agataatgaatacaattgaacaaacgaaagccataagtgacgtgaacagcaccagttacaatccaaagctcacatttacattcttttcataagctattat |
12185200 |
T |
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| Q |
101 |
agagagctgaagaacataagctgaaaccaacttatagagatgacataagcctaacaattgctta-aatattagaaaaagaaaaattgaccagaaattgaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||| |
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| T |
12185201 |
tgagagctgaagaacataagctgaaaccaacttatagagatgacataagcctaacaattgcttataacattagaaaaagaaaaaccgactagaaattgaa |
12185300 |
T |
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| Q |
200 |
tcgatgagacatctaagtcatgattcaa |
227 |
Q |
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| T |
12185301 |
tcgatgagacatctaagtcatgattcaa |
12185328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 12429529 - 12429756
Alignment:
| Q |
1 |
agataatgaatacaattgaacaaacgaaagccattagtgacgtgaacaacaccagttacaatcgaaagctcacatttacattcttttcataagctattat |
100 |
Q |
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| T |
12429529 |
agataatgaatacaattgaacaaacgaaagccataagtgacgtgaacagcaccagttacaatccaaagctcacatttacattcttttcataagctattat |
12429628 |
T |
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| Q |
101 |
agagagctgaagaacataagctgaaaccaacttatagagatgacataagcctaacaattgctta-aatattagaaaaagaaaaattgaccagaaattgaa |
199 |
Q |
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| T |
12429629 |
tgagagctgaagaacataagctgaaaccaacttatagagatgacataagcctaacaattgcttataacattagaaaaagaaaaaccgactagaaattgaa |
12429728 |
T |
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| Q |
200 |
tcgatgagacatctaagtcatgattcaa |
227 |
Q |
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| T |
12429729 |
tcgatgagacatctaagtcatgattcaa |
12429756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5554204 - 5554289
Alignment:
| Q |
1 |
agataatgaatacaattgaacaaacgaaagccattagtgacgtgaacaacaccagttacaatcgaaagctcacatttacattcttt |
86 |
Q |
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| T |
5554204 |
agataatggatgcagttgaacaaataaaagtcattactgacgtgaacaacaccagttacgatccaaagcttacgtttacattcttt |
5554289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 5604643 - 5604558
Alignment:
| Q |
1 |
agataatgaatacaattgaacaaacgaaagccattagtgacgtgaacaacaccagttacaatcgaaagctcacatttacattcttt |
86 |
Q |
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| T |
5604643 |
agataatggatgcagttgaacaaacaaaagccattagtgatgggaacagcacgagttacactccaaagcttacatttacattcttt |
5604558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5630727 - 5630812
Alignment:
| Q |
1 |
agataatgaatacaattgaacaaacgaaagccattagtgacgtgaacaacaccagttacaatcgaaagctcacatttacattcttt |
86 |
Q |
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| T |
5630727 |
agataatggatgcagttgaacaaacaaaagccattagtgatgggaacagcacgagttacactccaaagcttacatttacattcttt |
5630812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5648220 - 5648305
Alignment:
| Q |
1 |
agataatgaatacaattgaacaaacgaaagccattagtgacgtgaacaacaccagttacaatcgaaagctcacatttacattcttt |
86 |
Q |
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| T |
5648220 |
agataatggatacagtccaacaaacaaaagccattactgacgcgaatagcaccatttacaattcaaagcttacatttacattcttt |
5648305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 13167973 - 13168017
Alignment:
| Q |
42 |
gtgaacaacaccagttacaatcgaaagctcacatttacattcttt |
86 |
Q |
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| T |
13167973 |
gtgaacaacactagttacaatccaaagcttacatttagattcttt |
13168017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 10199469 - 10199418
Alignment:
| Q |
84 |
ttttcataagctattatagagagctgaagaacataagctgaaaccaacttat |
135 |
Q |
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| T |
10199469 |
ttttcataagctattttagagagcttatgaaaataagctgaaaacaacttat |
10199418 |
T |
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