View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15023_high_26 (Length: 222)

Name: NF15023_high_26
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15023_high_26
NF15023_high_26
[»] scaffold1320 (1 HSPs)
scaffold1320 (9-162)||(1579-1732)
[»] chr8 (11 HSPs)
chr8 (9-162)||(15078983-15079136)
chr8 (9-162)||(15167138-15167291)
chr8 (10-149)||(15163312-15163446)
chr8 (189-222)||(3456825-3456858)
chr8 (179-220)||(28580970-28581012)
chr8 (185-222)||(7968940-7968977)
chr8 (179-222)||(4830032-4830076)
chr8 (179-222)||(18422446-18422490)
chr8 (179-222)||(21557457-21557501)
chr8 (179-222)||(27571842-27571886)
chr8 (179-222)||(44632178-44632222)
[»] chr6 (6 HSPs)
chr6 (179-222)||(32409172-32409215)
chr6 (184-222)||(25023650-25023688)
chr6 (179-222)||(15169955-15169999)
chr6 (179-222)||(15178727-15178771)
chr6 (179-222)||(24623310-24623354)
chr6 (179-222)||(788890-788934)
[»] chr5 (5 HSPs)
chr5 (185-222)||(43135193-43135230)
chr5 (179-222)||(29695039-29695083)
chr5 (179-222)||(20125050-20125093)
chr5 (179-222)||(19647501-19647545)
chr5 (189-217)||(21052998-21053026)
[»] chr7 (8 HSPs)
chr7 (179-222)||(7388032-7388076)
chr7 (189-222)||(3953465-3953498)
chr7 (179-220)||(44717389-44717430)
chr7 (179-222)||(3536247-3536291)
chr7 (179-222)||(27833394-27833438)
chr7 (179-222)||(37325977-37326021)
chr7 (179-222)||(42227798-42227842)
chr7 (179-222)||(44868148-44868192)
[»] chr4 (7 HSPs)
chr4 (179-222)||(21649302-21649346)
chr4 (179-222)||(48159701-48159745)
chr4 (179-222)||(17656787-17656830)
chr4 (179-222)||(17948129-17948173)
chr4 (179-222)||(22164262-22164306)
chr4 (183-222)||(37005516-37005556)
chr4 (179-222)||(50380829-50380873)
[»] chr3 (11 HSPs)
chr3 (179-222)||(45334213-45334257)
chr3 (179-222)||(5534695-5534738)
chr3 (179-222)||(23332674-23332717)
chr3 (184-222)||(42269322-42269360)
chr3 (179-222)||(7464484-7464528)
chr3 (179-222)||(16980347-16980391)
chr3 (179-222)||(17755145-17755189)
chr3 (179-222)||(19056465-19056509)
chr3 (179-222)||(24521672-24521716)
chr3 (179-222)||(25727960-25728004)
chr3 (180-220)||(49223021-49223061)
[»] chr1 (10 HSPs)
chr1 (179-222)||(13401621-13401665)
chr1 (179-222)||(6219856-6219899)
chr1 (180-222)||(3573319-3573361)
chr1 (180-222)||(41926846-41926888)
chr1 (189-222)||(27023659-27023692)
chr1 (189-222)||(30548095-30548128)
chr1 (179-222)||(17917131-17917175)
chr1 (179-222)||(27533267-27533311)
chr1 (179-215)||(42267231-42267267)
chr1 (179-222)||(43356459-43356503)
[»] chr2 (6 HSPs)
chr2 (179-222)||(3197073-3197116)
chr2 (187-220)||(41682389-41682422)
chr2 (179-222)||(3196584-3196628)
chr2 (182-222)||(10991566-10991606)
chr2 (179-222)||(24581010-24581054)
chr2 (179-222)||(25395435-25395479)


Alignment Details
Target: scaffold1320 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 1579 - 1732
Alignment:
Q  9 acatcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaa 108  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1579 acatcatcatcagcttcttgcaacttcaaccagtcctctgaaaaagttacaagaaataaatacaaattgcaattcagttccagaaaacattttcttttaa 1678  T
Q  109 tttcgtgttttaactaatagttataaattgtaaaaatatcacacttaaagtcag 162  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  1679 tttcgtgttttcactaatagttataaattgtaaaaatatcacactaaaagtcag 1732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 15078983 - 15079136
Alignment:
Q  9 acatcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  15078983 acatcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaatttgcaattcagttccagaaaacattttcttttaa 15079082  T
Q  109 tttcgtgttttaactaatagttataaattgtaaaaatatcacacttaaagtcag 162  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  15079083 tttcgtgttttcactaatagttataaattgtaaaaatatcacactaaaagtcag 15079136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 15167291 - 15167138
Alignment:
Q  9 acatcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaa 108  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15167291 acatcatcattagcttcttgcaacttcaaccagtcctctgaaaaagttacaagaaataaatacaaattgcaattcagttccagaaaacattttcttttaa 15167192  T
Q  109 tttcgtgttttaactaatagttataaattgtaaaaatatcacacttaaagtcag 162  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  15167191 tttcgtgttttcactaatagttataaattgtaaaaatatcacactaaaagtcag 15167138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 15163446 - 15163312
Alignment:
Q  10 catcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaat 109  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||  |||||||||||    
T  15163446 catcatcatcagcttcttgcaacttcaaccagtcctctgaaaaagttaaaagaaataaatac-aattgcaattcagttccagaaaac--tttcttttaat 15163350  T
Q  110 ttcgtgttttaactaatagttataaattgtaaaaatatca 149  Q
    ||| |||||| ||||||| |  ||||| ||||||||||||    
T  15163349 ttcatgttttcactaataat--taaatcgtaaaaatatca 15163312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 3456825 - 3456858
Alignment:
Q  189 tttgaacccgaaccttacatatattatgcattgt 222  Q
    ||||||||||||||||||||||||||||||||||    
T  3456825 tttgaacccgaaccttacatatattatgcattgt 3456858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 28581012 - 28580970
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcatt 220  Q
    ||||||||||||||||||| ||||||||||||| |||||||||    
T  28581012 gtggtcgggatttgaaccccgaaccttacatattttatgcatt 28580970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 7968940 - 7968977
Alignment:
Q  185 gggatttgaacccgaaccttacatatattatgcattgt 222  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  7968940 gggatttgaacccggaccttgcatatattatgcattgt 7968977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 4830076 - 4830032
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    |||||||||||| |||||| ||||||| |||||||||||||||||    
T  4830076 gtggtcgggattcgaaccccgaaccttgcatatattatgcattgt 4830032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 18422446 - 18422490
Alignment:
Q  179 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgt 222  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||||    
T  18422446 gtggttggggtttgaatcccgaaccttacatatattatgcattgt 18422490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 21557501 - 21557457
Alignment:
Q  179 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgt 222  Q
    |||||||||||| ||||| || |||||||||||||||||||||||    
T  21557501 gtggtcgggattcgaacctcggaccttacatatattatgcattgt 21557457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 27571842 - 27571886
Alignment:
Q  179 gtggtcgggatttgaacccgaa-ccttacatatattatgcattgt 222  Q
    ||||||||||||||||||| || |||| |||||||||||||||||    
T  27571842 gtggtcgggatttgaaccccaaaccttgcatatattatgcattgt 27571886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 44632178 - 44632222
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||    
T  44632178 gtggtcggggtttgaaccccgaaccttatatatattatgcattgt 44632222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 32409172 - 32409215
Alignment:
Q  179 gtggtcgggatttgaacccgaaccttacatatattatgcattgt 222  Q
    ||||||| | ||||||||||||||||||||||||||||||||||    
T  32409172 gtggtcgaggtttgaacccgaaccttacatatattatgcattgt 32409215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 25023688 - 25023650
Alignment:
Q  184 cgggatttgaacccgaaccttacatatattatgcattgt 222  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25023688 cgggatttgaacccgaactttacatatattatgcattgt 25023650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 15169999 - 15169955
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  15169999 gtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15169955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 15178771 - 15178727
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  15178771 gtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15178727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 24623310 - 24623354
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  24623310 gtggtcggggtttgaaccccgaaccttacatatattatgcattgt 24623354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 788934 - 788890
Alignment:
Q  179 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgt 222  Q
    ||||||||| ||||||| ||||||||| |||||||||||||||||    
T  788934 gtggtcggggtttgaactccgaaccttgcatatattatgcattgt 788890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 43135193 - 43135230
Alignment:
Q  185 gggatttgaacccgaaccttacatatattatgcattgt 222  Q
    |||||||||||||| |||||||||||||||||||||||    
T  43135193 gggatttgaacccggaccttacatatattatgcattgt 43135230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 29695083 - 29695039
Alignment:
Q  179 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgt 222  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||    
T  29695083 gtggtcggggtttgaaccacgaaccttacatatattatgcattgt 29695039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 20125093 - 20125050
Alignment:
Q  179 gtggtcgggatttgaacccgaaccttacatatattatgcattgt 222  Q
    ||||||||  |||||||||||||||| |||||||||||||||||    
T  20125093 gtggtcggagtttgaacccgaaccttgcatatattatgcattgt 20125050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 19647501 - 19647545
Alignment:
Q  179 gtggtcgggatttgaacccga-accttacatatattatgcattgt 222  Q
    ||||||||||||||||||| | |||||||||||||||| ||||||    
T  19647501 gtggtcgggatttgaaccccagaccttacatatattatacattgt 19647545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 21053026 - 21052998
Alignment:
Q  189 tttgaacccgaaccttacatatattatgc 217  Q
    |||||||||||||||||||||||||||||    
T  21053026 tttgaacccgaaccttacatatattatgc 21052998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 7388032 - 7388076
Alignment:
Q  179 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgt 222  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||    
T  7388032 gtggtcggggtttgaatcccgaaccttacatatattatgcattgt 7388076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 3953498 - 3953465
Alignment:
Q  189 tttgaacccgaaccttacatatattatgcattgt 222  Q
    |||||||||||||||| |||||||||||||||||    
T  3953498 tttgaacccgaaccttgcatatattatgcattgt 3953465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 44717430 - 44717389
Alignment:
Q  179 gtggtcgggatttgaacccgaaccttacatatattatgcatt 220  Q
    ||||||||||||||||| |||| |||||||||||||| ||||    
T  44717430 gtggtcgggatttgaactcgaatcttacatatattatacatt 44717389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 3536247 - 3536291
Alignment:
Q  179 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgt 222  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||    
T  3536247 gtggtcggagtttgaatcccgaaccttacatatattatgcattgt 3536291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 27833394 - 27833438
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||    
T  27833394 gtggtcggggtttgaaccccggaccttacatatattatgcattgt 27833438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 37325977 - 37326021
Alignment:
Q  179 gtggtcgggatttgaacccgaaccttacatatatt-atgcattgt 222  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||    
T  37325977 gtggccggggtttgaacccgaaccttacatatattaatgcattgt 37326021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 42227798 - 42227842
Alignment:
Q  179 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgt 222  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||    
T  42227798 gtggtcggagtttgaacctcgaaccttacatatattatgcattgt 42227842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 44868148 - 44868192
Alignment:
Q  179 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgt 222  Q
    |||||||| ||||||||| || |||||||||||||||||||||||    
T  44868148 gtggtcggaatttgaacctcggaccttacatatattatgcattgt 44868192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 21649346 - 21649302
Alignment:
Q  179 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgt 222  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||    
T  21649346 gtggtcgggatttgaagcccgatccttacatatattatgcattgt 21649302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 48159745 - 48159701
Alignment:
Q  179 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgt 222  Q
    |||||||||||||||||  ||||||||||||||||||||||||||    
T  48159745 gtggtcgggatttgaacttcgaaccttacatatattatgcattgt 48159701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 17656787 - 17656830
Alignment:
Q  179 gtggtcgggatttgaacccgaaccttacatatattatgcattgt 222  Q
    |||| ||||||| ||||| |||||||||||||||||||||||||    
T  17656787 gtggccgggattcgaacctgaaccttacatatattatgcattgt 17656830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 17948129 - 17948173
Alignment:
Q  179 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgt 222  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||||    
T  17948129 gtggtcggggtttgaactccgaaccttacatattttatgcattgt 17948173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 22164262 - 22164306
Alignment:
Q  179 gtggtcgggatttgaacccga-accttacatatattatgcattgt 222  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||    
T  22164262 gtggtcggggtttgaaccccagaccttacatatattatgcattgt 22164306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 37005516 - 37005556
Alignment:
Q  183 tcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  37005516 tcgggattcgaaccctgaaccttacatatattatgcattgt 37005556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 50380829 - 50380873
Alignment:
Q  179 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgt 222  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||    
T  50380829 gtggtcgagatttgaactccggaccttacatatattatgcattgt 50380873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 45334257 - 45334213
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||    
T  45334257 gtggtcgggatttgaaccccgaaccttgcatatattatgcattgt 45334213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 5534695 - 5534738
Alignment:
Q  179 gtggtcgggatttgaacccgaaccttacatatattatgcattgt 222  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||    
T  5534695 gtggtcgggatttgaacccgaaccttgcatattttacgcattgt 5534738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 23332717 - 23332674
Alignment:
Q  179 gtggtcgggatttgaacccgaaccttacatatattatgcattgt 222  Q
    ||||||||| |||||||| ||||| |||||||||||||||||||    
T  23332717 gtggtcggggtttgaaccagaaccatacatatattatgcattgt 23332674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 42269360 - 42269322
Alignment:
Q  184 cgggatttgaacccgaaccttacatatattatgcattgt 222  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  42269360 cggggtttgaactcgaaccttacatatattatgcattgt 42269322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 7464484 - 7464528
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||    
T  7464484 gtggtcggggtttgaaccccggaccttacatatattatgcattgt 7464528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 16980347 - 16980391
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||    
T  16980347 gtggtcgggatttgaaccatgaaccttgcatatattatgcattgt 16980391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 17755189 - 17755145
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||    
T  17755189 gtggtcggaatttgaaccccgaaccttacatatattatgtattgt 17755145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 19056509 - 19056465
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||    
T  19056509 gtggtcggaatttgaaccccgaaccttacatatattatgtattgt 19056465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 24521716 - 24521672
Alignment:
Q  179 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgt 222  Q
    ||||||| ||||||||| ||||||||||||||| |||||||||||    
T  24521716 gtggtcgagatttgaactccgaaccttacatattttatgcattgt 24521672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 25727960 - 25728004
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||    
T  25727960 gtggtcgggatttgaaccccggaccttgcatatattatgcattgt 25728004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 49223021 - 49223061
Alignment:
Q  180 tggtcgggatttgaacccgaaccttacatatattatgcatt 220  Q
    ||||||||||| |||||| |||||| |||||||||||||||    
T  49223021 tggtcgggattcgaaccccaaccttgcatatattatgcatt 49223061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 13401665 - 13401621
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  13401665 gtggtcggggtttgaaccccgaaccttacatatattatgcattgt 13401621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 6219856 - 6219899
Alignment:
Q  179 gtggtcgggatttgaacccgaaccttacatatattatgcattgt 222  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||    
T  6219856 gtggtcaggatttgaacccggaccttacatatattatgtattgt 6219899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 3573319 - 3573361
Alignment:
Q  180 tggtcgggatttgaacccgaaccttacatatattatgcattgt 222  Q
    |||||||||||| ||| | ||||||||||||||||||||||||    
T  3573319 tggtcgggatttaaactcaaaccttacatatattatgcattgt 3573361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 41926888 - 41926846
Alignment:
Q  180 tggtcgggatttgaacccgaaccttacatatattatgcattgt 222  Q
    ||||||| ||| ||||||| |||||||||||||||||||||||    
T  41926888 tggtcggaattcgaacccggaccttacatatattatgcattgt 41926846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 27023659 - 27023692
Alignment:
Q  189 tttgaacccgaaccttacatatattatgcattgt 222  Q
    |||||||||||||||| |||||||||||||||||    
T  27023659 tttgaacccgaaccttgcatatattatgcattgt 27023692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 30548095 - 30548128
Alignment:
Q  189 tttgaacccgaaccttacatatattatgcattgt 222  Q
    |||||||||||||||| |||||||||||||||||    
T  30548095 tttgaacccgaaccttgcatatattatgcattgt 30548128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 17917131 - 17917175
Alignment:
Q  179 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgt 222  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||    
T  17917131 gtggtcggggtttgaatcccgaaccttacatattttatgcattgt 17917175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 27533311 - 27533267
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||    
T  27533311 gtggtcggggtttgaaccccgaaccttgcatatattatgcattgt 27533267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 42267267 - 42267231
Alignment:
Q  179 gtggtcgggatttgaacccgaaccttacatatattat 215  Q
    |||||||||||||||||| | ||||||||||||||||    
T  42267267 gtggtcgggatttgaacctggaccttacatatattat 42267231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 43356503 - 43356459
Alignment:
Q  179 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgt 222  Q
    ||||||||| ||||||| || ||||||||||||||||||||||||    
T  43356503 gtggtcggggtttgaactccaaaccttacatatattatgcattgt 43356459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 3197073 - 3197116
Alignment:
Q  179 gtggtcgggatttgaacccgaaccttacatatattatgcattgt 222  Q
    ||||||||| |||||| ||||||||| |||||||||||||||||    
T  3197073 gtggtcggggtttgaatccgaaccttgcatatattatgcattgt 3197116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 41682389 - 41682422
Alignment:
Q  187 gatttgaacccgaaccttacatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||    
T  41682389 gatttgaaccctaaccttacatatattatgcatt 41682422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 3196628 - 3196584
Alignment:
Q  179 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgt 222  Q
    ||||||| |||||||| | ||||||||||||||||||||||||||    
T  3196628 gtggtcgagatttgaatctcgaaccttacatatattatgcattgt 3196584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 10991606 - 10991566
Alignment:
Q  182 gtcgggatttgaacccgaaccttacatatattatgcattgt 222  Q
    ||||||||| ||||||| ||||||||||||||||| |||||    
T  10991606 gtcgggattcgaacccggaccttacatatattatgtattgt 10991566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 24581010 - 24581054
Alignment:
Q  179 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgt 222  Q
    ||||||||| |||||||| |||||||| |||||||||||||||||    
T  24581010 gtggtcggggtttgaacctcgaaccttgcatatattatgcattgt 24581054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 25395435 - 25395479
Alignment:
Q  179 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 222  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||    
T  25395435 gtggtcgggatttgaaccttgaaccttgcatatattatgcattgt 25395479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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