View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15023_high_3 (Length: 489)
Name: NF15023_high_3
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15023_high_3 |
 | |
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| [»] scaffold0328 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 12 - 474
Target Start/End: Original strand, 30835078 - 30835536
Alignment:
| Q |
12 |
tgaaatcacgatgggctatgaccatttaaactaaaattatactttagattttcatcaaaatcaccgtaattttgtcaaacttactgtcaattcaaacaga |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
30835078 |
tgaaatcacgatgggctatgaccatttaaactagaattatactttagattttcatcaaaatcaccgtaattttgtcaatcttaccgtcaattcaaacaga |
30835177 |
T |
|
| Q |
112 |
cactatctctatcatcaccttatctttagtcagcgttgaattaatgctatttatttatttatttattcaacaagctctatttaaatcattgagtactata |
211 |
Q |
| |
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||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
30835178 |
cactatctctatcctcaccttatctttagtcaacgttgaattaatgctatttatttatttatt----caacaagctctatttaaatcattgagtactata |
30835273 |
T |
|
| Q |
212 |
aattgtttgatatatgaatgaannnnnnnacctctaggacgtccccaatgttgacaatgaaggcattgggcaggggcttaacaggaacccacataccatc |
311 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30835274 |
aattgtttgatatatgaatgaatttttttacctctagcacgtccccaatgttgacaatgaaggcattgggcaggggcttaacaggaacccacataccatc |
30835373 |
T |
|
| Q |
312 |
tttccttatttggagaccttctacttcattgagttgtaggaggagagtaacaccttgaggatccgaatgatttgtgaggccaataaccttttctggttga |
411 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30835374 |
tttccttatttggagaccttctacttcattgagttgtaggaggagagtaacaccttgaggatccgaatgatttgtgaggccaataaccttttctggttga |
30835473 |
T |
|
| Q |
412 |
ggacaaggagggtaatagttcatcctcatcatttgtatcccatcttcaaataactctcttatt |
474 |
Q |
| |
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| T |
30835474 |
ggacaaggagggtaatagttcatcctcatcatttgtatcccatcttcaaataactctcttatt |
30835536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 241 - 474
Target Start/End: Original strand, 30839916 - 30840149
Alignment:
| Q |
241 |
acctctaggacgtccccaatgttgacaatgaaggcattgggcaggggcttaacaggaacccacataccatctttccttatttggagaccttctacttcat |
340 |
Q |
| |
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|||||||| | ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| | || ||||||||| || | ||||||||||||| |
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| T |
30839916 |
acctctagcatgtcaccaatgttgacaatgaaggcattgggaaggggtttaacaggaacccacatgcaatttttccttatctgtaacccttctacttcat |
30840015 |
T |
|
| Q |
341 |
tgagttgtaggaggagagtaacaccttgaggatccgaatgatttgtgaggccaataaccttttctggttgaggacaaggagggtaatagttcatcctcat |
440 |
Q |
| |
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||||||||| ||||| ||| | |||| ||| || |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||| |
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| T |
30840016 |
tgagttgtaagaggatagtgagacctacagggtctgaatgatttgtgagaccaataaccttctctggttgaggacaaggtgggtaatagttcgtcctcat |
30840115 |
T |
|
| Q |
441 |
catttgtatcccatcttcaaataactctcttatt |
474 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
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| T |
30840116 |
catttgtatcccatcttcaaataattctcttatt |
30840149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 252 - 440
Target Start/End: Original strand, 30827951 - 30828139
Alignment:
| Q |
252 |
gtccccaatgttgacaatgaaggcattgggcaggggcttaacaggaacccacataccatctttccttatttggagaccttctacttcattgagttgtagg |
351 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |||||| |||||||| |||||||||||||| |
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| T |
30827951 |
gtccccaatgttaacaatgaaggcattaggcaggggtttaacaggaacccacataccatctttcctcacttggagcccttctacatcattgagttgtaga |
30828050 |
T |
|
| Q |
352 |
aggagagtaacaccttgaggatccgaatgatttgtgaggccaataaccttttctggttgaggacaaggagggtaatagttcatcctcat |
440 |
Q |
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|
|||| ||| | | ||| ||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
30828051 |
aggatagtgagtgcagatccatctgaatggggtgttaggccaataaccttttctggttgtggacatggagggtaatagttcatcctcat |
30828139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 252 - 440
Target Start/End: Original strand, 30852844 - 30853032
Alignment:
| Q |
252 |
gtccccaatgttgacaatgaaggcattgggcaggggcttaacaggaacccacataccatctttccttatttggagaccttctacttcattgagttgtagg |
351 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |||||| |||||||| |||||||||||||| |
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| T |
30852844 |
gtccccaatgttaacaatgaaggcattaggcaggggtttaacaggaacccacataccatctttcctcacttggagcccttctacatcattgagttgtaga |
30852943 |
T |
|
| Q |
352 |
aggagagtaacaccttgaggatccgaatgatttgtgaggccaataaccttttctggttgaggacaaggagggtaatagttcatcctcat |
440 |
Q |
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| T |
30852944 |
aggatagtgagtgcagatccatctgaatggggtgttaggccaataaccttttctggttgtggacatggagggtaatagttcatcctcat |
30853032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 26914200 - 26914306
Alignment:
| Q |
241 |
acctctaggacgtccccaatgttgacaatgaaggcattgggcaggggcttaacaggaacccacataccatctttccttatttggagaccttctacttcat |
340 |
Q |
| |
|
|||||||| | ||| |||||||||| || || ||||| | || ||||||| ||||| |||||| |||||||| ||||||| || ||||||| ||||| |
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| T |
26914200 |
acctctagcatgtctccaatgttgataacaaaagcatttgtgagaggcttaataggaatccacattccatctttttttatttgaaggccttctatttcat |
26914299 |
T |
|
| Q |
341 |
tgagttg |
347 |
Q |
| |
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||||||| |
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| T |
26914300 |
tgagttg |
26914306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 347
Target Start/End: Complemental strand, 21212030 - 21211924
Alignment:
| Q |
241 |
acctctaggacgtccccaatgttgacaatgaaggcattgggcaggggcttaacaggaacccacataccatctttccttatttggagaccttctacttcat |
340 |
Q |
| |
|
|||||||| | ||| |||||||||| || || ||||| | || ||||||| ||||| |||||| |||||||| ||||||| || ||||||| ||||| |
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| T |
21212030 |
acctctagcatgtctccaatgttgataacaaaagcatttgtgagaggcttaataggaatccacattccatctttttttatttgaaggccttctatttcat |
21211931 |
T |
|
| Q |
341 |
tgagttg |
347 |
Q |
| |
|
||||||| |
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|
| T |
21211930 |
tgagttg |
21211924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 440
Target Start/End: Complemental strand, 8824 - 8787
Alignment:
| Q |
403 |
tctggttgaggacaaggagggtaatagttcatcctcat |
440 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
8824 |
tctggttgaggacatggagggtaataattcatcctcat |
8787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 440
Target Start/End: Original strand, 258482 - 258519
Alignment:
| Q |
403 |
tctggttgaggacaaggagggtaatagttcatcctcat |
440 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
258482 |
tctggttgaggacaaggagggtaataattcattctcat |
258519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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