View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15023_high_4 (Length: 487)

Name: NF15023_high_4
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15023_high_4
NF15023_high_4
[»] chr6 (8 HSPs)
chr6 (366-482)||(17784196-17784312)
chr6 (257-301)||(33399967-33400011)
chr6 (19-78)||(14778402-14778460)
chr6 (252-301)||(4116795-4116844)
chr6 (257-301)||(4117602-4117646)
chr6 (257-301)||(14657264-14657308)
chr6 (257-301)||(17784440-17784484)
chr6 (257-301)||(33401181-33401225)
[»] chr7 (20 HSPs)
chr7 (19-125)||(19243165-19243271)
chr7 (324-418)||(37284240-37284334)
chr7 (186-240)||(19243049-19243103)
chr7 (324-418)||(37289185-37289279)
chr7 (174-240)||(39867968-39868034)
chr7 (257-301)||(37284110-37284154)
chr7 (19-76)||(34360732-34360788)
chr7 (257-301)||(4227227-4227271)
chr7 (257-301)||(12643101-12643145)
chr7 (257-301)||(12930773-12930817)
chr7 (257-297)||(37289369-37289409)
chr7 (257-301)||(45915863-45915907)
chr7 (257-300)||(4226126-4226169)
chr7 (204-257)||(15821893-15821946)
chr7 (261-301)||(22661362-22661402)
chr7 (257-301)||(27480802-27480846)
chr7 (196-240)||(35076505-35076549)
chr7 (196-240)||(35091026-35091070)
chr7 (257-301)||(38643551-38643595)
chr7 (257-301)||(45914527-45914571)
[»] scaffold0243 (2 HSPs)
scaffold0243 (19-125)||(22072-22172)
scaffold0243 (186-240)||(22235-22289)
[»] chr3 (19 HSPs)
chr3 (324-418)||(22735490-22735584)
chr3 (324-418)||(22736565-22736659)
chr3 (324-418)||(44476180-44476274)
chr3 (324-418)||(44481828-44481922)
chr3 (257-301)||(22736745-22736789)
chr3 (257-301)||(32717160-32717204)
chr3 (261-301)||(44482008-44482048)
chr3 (257-301)||(2944721-2944765)
chr3 (257-301)||(11026687-11026731)
chr3 (257-301)||(29193048-29193092)
chr3 (261-301)||(44476054-44476094)
chr3 (257-301)||(45279339-45279383)
chr3 (26-67)||(15620981-15621022)
chr3 (26-67)||(15628342-15628383)
chr3 (26-67)||(18692192-18692233)
chr3 (257-301)||(1757359-1757403)
chr3 (261-301)||(29192040-29192080)
chr3 (261-301)||(45278549-45278589)
chr3 (257-301)||(48189154-48189198)
[»] scaffold0018 (2 HSPs)
scaffold0018 (298-418)||(73214-73334)
scaffold0018 (257-298)||(73110-73151)
[»] scaffold0020 (3 HSPs)
scaffold0020 (174-240)||(105263-105329)
scaffold0020 (19-82)||(105581-105643)
scaffold0020 (84-125)||(105379-105420)
[»] chr8 (12 HSPs)
chr8 (324-418)||(33497147-33497241)
chr8 (324-418)||(33497491-33497585)
chr8 (324-418)||(38599095-38599189)
chr8 (257-301)||(33497671-33497715)
chr8 (19-70)||(24653984-24654035)
chr8 (257-301)||(1232852-1232896)
chr8 (257-301)||(34214584-34214628)
chr8 (257-301)||(34665771-34665815)
chr8 (204-240)||(23641040-23641076)
chr8 (257-301)||(25288131-25288175)
chr8 (257-301)||(34213765-34213809)
chr8 (257-301)||(38598965-38599009)
[»] chr5 (20 HSPs)
chr5 (324-418)||(21972220-21972314)
chr5 (324-418)||(21977892-21977986)
chr5 (174-240)||(22705501-22705567)
chr5 (19-79)||(22705225-22705284)
chr5 (84-125)||(22705411-22705452)
chr5 (257-301)||(8654108-8654152)
chr5 (257-301)||(20072924-20072968)
chr5 (261-301)||(21978072-21978112)
chr5 (257-301)||(20856933-20856977)
chr5 (261-301)||(21972095-21972135)
chr5 (257-301)||(22870517-22870561)
chr5 (257-287)||(39181058-39181088)
chr5 (26-67)||(18956368-18956409)
chr5 (257-301)||(14744785-14744829)
chr5 (261-301)||(16532898-16532938)
chr5 (257-301)||(16533680-16533724)
chr5 (257-301)||(20072122-20072166)
chr5 (257-301)||(20857602-20857646)
chr5 (257-301)||(31107932-31107976)
chr5 (257-301)||(39181851-39181895)
[»] chr4 (12 HSPs)
chr4 (324-418)||(55012964-55013058)
chr4 (257-301)||(23455744-23455788)
chr4 (257-301)||(23454955-23454999)
chr4 (257-301)||(38813555-38813599)
chr4 (257-301)||(52815664-52815708)
chr4 (257-301)||(56556583-56556627)
chr4 (259-301)||(54590146-54590188)
chr4 (257-301)||(52816478-52816522)
chr4 (257-301)||(53477135-53477179)
chr4 (257-301)||(54591633-54591677)
chr4 (257-301)||(55013143-55013187)
chr4 (257-301)||(56557380-56557424)
[»] chr1 (13 HSPs)
chr1 (324-418)||(32619515-32619609)
chr1 (324-418)||(32622231-32622325)
chr1 (261-301)||(32619389-32619429)
chr1 (257-301)||(13295136-13295180)
chr1 (257-301)||(13295635-13295679)
chr1 (261-301)||(32622411-32622451)
chr1 (257-301)||(46282072-46282116)
chr1 (257-301)||(51935254-51935298)
chr1 (254-299)||(2829603-2829648)
chr1 (261-298)||(6344260-6344297)
chr1 (261-301)||(46282848-46282888)
chr1 (257-301)||(49093042-49093086)
chr1 (261-301)||(50063003-50063043)
[»] chr2 (12 HSPs)
chr2 (324-418)||(20101900-20101994)
chr2 (257-301)||(20101771-20101815)
chr2 (257-301)||(25624488-25624532)
chr2 (354-409)||(23206292-23206347)
chr2 (354-409)||(23677896-23677951)
chr2 (257-301)||(20982525-20982569)
chr2 (257-301)||(29957818-29957862)
chr2 (257-287)||(20983330-20983360)
chr2 (324-418)||(23183729-23183823)
chr2 (324-418)||(23594986-23595080)
chr2 (257-301)||(20103199-20103243)
chr2 (257-301)||(25623289-25623333)
[»] scaffold0182 (3 HSPs)
scaffold0182 (324-418)||(13265-13359)
scaffold0182 (257-301)||(14432-14476)
scaffold0182 (257-301)||(13135-13179)
[»] scaffold0009 (2 HSPs)
scaffold0009 (257-301)||(262496-262540)
scaffold0009 (257-301)||(261002-261046)
[»] scaffold1493 (1 HSPs)
scaffold1493 (257-301)||(594-638)
[»] scaffold0347 (1 HSPs)
scaffold0347 (257-301)||(13610-13654)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 366 - 482
Target Start/End: Complemental strand, 17784312 - 17784196
Alignment:
Q  366 ttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaaagaaactgaccacgcgtgaaatgtccataatgcccatgtcttcagct 465  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17784312 ttttgtcaggacacgtcagcagatggcaattgcaatgacatttttgcccttaaagaaactgaccacgcgtgaaatgtccataatgcccatgtcttcatct 17784213  T
Q  466 tcccacttcttctcact 482  Q
    |||| ||| ||| ||||    
T  17784212 tccctcttattcccact 17784196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 33399967 - 33400011
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| || | ||||||||    
T  33399967 gcttaaatatgcttttcatccctgtaattataggccgtttgattt 33400011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 14778460 - 14778402
Alignment:
Q  19 gttctactccattccaatcgcaaggttgtggttgctctccaaagttaaaagagattccat 78  Q
    |||||| ||||||||||| ||||||  |||| |||||||||||||| |||||||||||||    
T  14778460 gttctattccattccaattgcaaggcagtggctgctctccaaagtt-aaagagattccat 14778402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 4116795 - 4116844
Alignment:
Q  252 agaatgcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||| ||||||||||| ||||||||||||||||||| || | ||||||||    
T  4116795 agaaggcttaaatatgtttttcatccctgtaattataggccgtttgattt 4116844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 4117646 - 4117602
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||| ||||||||||||||||||| || | ||||||||    
T  4117646 gcttaaatatgtttttcatccctgtaattataggccgtttgattt 4117602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 14657308 - 14657264
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||| ||||||| || | ||||||||    
T  14657308 gcttaaatatgcttttcatccctataattataggccgtttgattt 14657264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 17784484 - 17784440
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||||||||||||||| ||| || || ||||||||||    
T  17784484 gcttaaatatgcttttcatccctgcaatgataggccatttgattt 17784440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 33401225 - 33401181
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||||||||||||||| |||||| || | ||||||||    
T  33401225 gcttaaatatgcttttcatccctgcaattataggccgtttgattt 33401181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 19243271 - 19243165
Alignment:
Q  19 gttctactccattccaatcgcaaggttgtggttgctctccaaagttaaaagagattccatgatcaattttagattgtataataggctttaatgtaaacca 118  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19243271 gttctactccattccaattgcaaggctgtggttgctctccaaagttaaaagagattccatgatcgattttagattgtatattaggctttaatgtaaacca 19243172  T
Q  119 ttcatgc 125  Q
    |||||||    
T  19243171 ttcatgc 19243165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 37284240 - 37284334
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||| |||||||||||| |  | ||||||||||||||||||||    
T  37284240 gaggtggagggtaattagatacgtggcatttggtgaatggagttttgtcaggacacgtcagcagatggcgagggaaatgacatttttgcccttaa 37284334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 19243103 - 19243049
Alignment:
Q  186 agaacatagcatgtatacttaggcttaatgtaaatttatcatgaatatttatttt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19243103 agaacatagcatgtatacttaggcttaatgtaaatttatcatgcatatttatttt 19243049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 418
Target Start/End: Complemental strand, 37289279 - 37289185
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||| ||||| |||||| |  | |||||||||||| |||||||    
T  37289279 gaggtggagggtaattagatacgtggcatttggtgaatggagttttgtcaggacacgtcagctgatggcgagggaaatgacatttttacccttaa 37289185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 39867968 - 39868034
Alignment:
Q  174 tctttatagaacagaacatagcatgtatacttaggcttaatgtaaatttatcatgaatatttatttt 240  Q
    ||||||| | ||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  39867968 tctttatcgcacataacatagcatgtatacttagacttaatgtaaatttatcatgtatatttatttt 39868034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 37284110 - 37284154
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| || ||||||||||    
T  37284110 gcttaaatatgcttttcatccctgtaattataggccatttgattt 37284154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 34360788 - 34360732
Alignment:
Q  19 gttctactccattccaatcgcaaggttgtggttgctctccaaagttaaaagagattcc 76  Q
    |||||| ||||||||||| ||||||| |||| |||||||||||||| |||||||||||    
T  34360788 gttctattccattccaattgcaaggtcgtggctgctctccaaagtt-aaagagattcc 34360732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 4227271 - 4227227
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  4227271 gcttaaatatgcatttcatccctgtaattataggccatttgattt 4227227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 12643101 - 12643145
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  12643101 gcttaaatatgcatttcatccctgtaattataggccatttgattt 12643145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 12930773 - 12930817
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||    
T  12930773 gcttaaatatgcatttcatccctgcaattataggtcatttgattt 12930817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 37289409 - 37289369
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttg 297  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  37289409 gcttaaatatgcttttcatccctgtaattataggccatttg 37289369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 45915907 - 45915863
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  45915907 gcttaaatatgcatttcatccctgtaattataggccatttgattt 45915863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 300
Target Start/End: Original strand, 4226126 - 4226169
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgatt 300  Q
    |||||||||||| |||||||||||||||||| || |||||||||    
T  4226126 gcttaaatatgcatttcatccctgtaattataggccatttgatt 4226169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 15821893 - 15821946
Alignment:
Q  204 ttaggcttaatgtaaatttatcatgaatatttattttctgtagaccttagaatg 257  Q
    ||||| ||||||||||||||||||| |||||||||||  | |||| ||||||||    
T  15821893 ttagggttaatgtaaatttatcatgcatatttatttttcgcagactttagaatg 15821946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 22661362 - 22661402
Alignment:
Q  261 aaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||| || | ||||||||    
T  22661362 aaatatgcttttcatccctgtaattataggccgtttgattt 22661402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 27480846 - 27480802
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||| ||||||||||||||||||| || | ||||||||    
T  27480846 gcttaaatatgtttttcatccctgtaattataggccgtttgattt 27480802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 35076505 - 35076549
Alignment:
Q  196 atgtatacttaggcttaatgtaaatttatcatgaatatttatttt 240  Q
    ||||||| ||||| ||||||||||||||| ||| |||||||||||    
T  35076505 atgtatatttagggttaatgtaaatttatgatgtatatttatttt 35076549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 35091026 - 35091070
Alignment:
Q  196 atgtatacttaggcttaatgtaaatttatcatgaatatttatttt 240  Q
    ||||||| ||||  ||||||||||||||||||| |||||||||||    
T  35091026 atgtatatttagcattaatgtaaatttatcatgcatatttatttt 35091070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 38643551 - 38643595
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| ||||||||||| |||||| || ||||||||||    
T  38643551 gcttaaatatgcatttcatccctgcaattataggccatttgattt 38643595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 45914527 - 45914571
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| ||||||| |||||||||| || ||||||||||    
T  45914527 gcttaaatatgcatttcatctctgtaattataggccatttgattt 45914571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 22072 - 22172
Alignment:
Q  19 gttctactccattccaatcgcaaggttgtggttgctctccaaagttaaaagagattccatgatcaattttagattgtataataggctttaatgtaaacca 118  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||  ||    |||||||||||||||||||||||||||||||||||    
T  22072 gttctactccattccaattgcaaggctgtggttgctctccaaaattaaaagagattc--tg----attttagattgtataataggctttaatgtaaacca 22165  T
Q  119 ttcatgc 125  Q
    |||||||    
T  22166 ttcatgc 22172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 22235 - 22289
Alignment:
Q  186 agaacatagcatgtatacttaggcttaatgtaaatttatcatgaatatttatttt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22235 agaacatagcatgtatacttaggcttaatgtaaatttatcatgcatatttatttt 22289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 22735490 - 22735584
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | || | ||||||||||||||||||||    
T  22735490 gaggtggagggtaattagctacgtggcatttggtgaatggggttttgtcaggacacatcagaagatgacgatggaaatgacatttttgcccttaa 22735584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 324 - 418
Target Start/End: Complemental strand, 22736659 - 22736565
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || | ||| ||||||||||||||||    
T  22736659 gaggtggagggtaattagctacgtggcatttggtgaatgggattttgtcaggacacatcagcagatggcgatggaaattacatttttgcccttaa 22736565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 44476180 - 44476274
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||||| | |||||||||||||||||| |||| |||||||||| ||||||||||||||||||||  |  | ||||||| ||||||||||||    
T  44476180 gaggtggagggtgattagctacgtggcacttagtgactggggttttggcaggacacatcagcagatggggagggaaatgacaattttgcccttaa 44476274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 418
Target Start/End: Complemental strand, 44481922 - 44481828
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||||| | |||||||||||||||||| |||| |||||||||| ||||||||||||||||||||  |  | ||||||| ||||||||||||    
T  44481922 gaggtggagggtgattagctacgtggcacttagtgactggggttttggcaggacacatcagcagatggggagggaaatgacaattttgcccttaa 44481828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 22736789 - 22736745
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  22736789 gcttaaatatgtttttcatccctgtaattataggtcatttgattt 22736745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 32717204 - 32717160
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  32717204 gcttaaatatgcatttcatccctgtaattataggtcatttgattt 32717160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 44482048 - 44482008
Alignment:
Q  261 aaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  44482048 aaatatgcttttcatccctgtaattatgggccatttgattt 44482008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 2944765 - 2944721
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| || | ||||||||    
T  2944765 gcttaaatatgcttttcatccctgtaattataggccgtttgattt 2944721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 11026731 - 11026687
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| || | ||||||||    
T  11026731 gcttaaatatgcttttcatccctgtaattataggccgtttgattt 11026687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 29193092 - 29193048
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  29193092 gcttaaatatgcatttcatccctgtaattataggccatttgattt 29193048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 44476054 - 44476094
Alignment:
Q  261 aaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  44476054 aaatatgtttttcatccctgtaattatgggccatttgattt 44476094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 45279383 - 45279339
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| || | ||||||||    
T  45279383 gcttaaatatgcttttcatccctgtaattataggccgtttgattt 45279339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 15620981 - 15621022
Alignment:
Q  26 tccattccaatcgcaaggttgtggttgctctccaaagttaaa 67  Q
    ||||||||||||| |||||||||| ||| |||||||||||||    
T  15620981 tccattccaatcggaaggttgtggctgcgctccaaagttaaa 15621022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 15628342 - 15628383
Alignment:
Q  26 tccattccaatcgcaaggttgtggttgctctccaaagttaaa 67  Q
    ||||||||||||| |||||||||| ||| |||||||||||||    
T  15628342 tccattccaatcggaaggttgtggctgcgctccaaagttaaa 15628383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 18692192 - 18692233
Alignment:
Q  26 tccattccaatcgcaaggttgtggttgctctccaaagttaaa 67  Q
    ||||||||||||| |||||||||| ||| |||||||||||||    
T  18692192 tccattccaatcggaaggttgtggctgcgctccaaagttaaa 18692233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 1757403 - 1757359
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||| ||||||||||||||||||| || | ||||||||    
T  1757403 gcttaaatatgattttcatccctgtaattataggccgtttgattt 1757359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 29192040 - 29192080
Alignment:
Q  261 aaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||| |||||||||||||||||| || ||||||||||    
T  29192040 aaatatgcatttcatccctgtaattataggccatttgattt 29192080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 45278549 - 45278589
Alignment:
Q  261 aaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||| || | ||||||||    
T  45278549 aaatatgcttttcatccctgtaattataggccgtttgattt 45278589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 48189198 - 48189154
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||| ||||||||| || | ||||||||    
T  48189198 gcttaaatatgcttttcatccttgtaattataggccgtttgattt 48189154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 298 - 418
Target Start/End: Original strand, 73214 - 73334
Alignment:
Q  298 atttgtcctaattacaaannnnnnnngaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattg 397  Q
    ||||||||||||||||||        |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |  |    
T  73214 atttgtcctaattacaaaaatttgctgaggtggagggtaattagctacgtggcacttggtgaatgggattttgtcaggacacatcagcagatggcgaggg 73313  T
Q  398 caatgacatttttgcccttaa 418  Q
     ||||||  ||||||||||||    
T  73314 aaatgaccattttgcccttaa 73334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 73110 - 73151
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttga 298  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  73110 gcttaaatatgcttttcatccctgtaattatgggccatttga 73151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 105329 - 105263
Alignment:
Q  174 tctttatagaacagaacatagcatgtatacttaggcttaatgtaaatttatcatgaatatttatttt 240  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  105329 tctttatcgcacagaacatagcatgtatacttaggcttaatgtaaatttatcatgcatatttatttt 105263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 105643 - 105581
Alignment:
Q  19 gttctactccattccaatcgcaaggttgtggttgctctccaaagttaaaagagattccatgatc 82  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||    
T  105643 gttctactccattccaattgcaaggctgtggttgctctccaaagtt-aaagagattccatgatc 105581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 105420 - 105379
Alignment:
Q  84 attttagattgtataataggctttaatgtaaaccattcatgc 125  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  105420 attttagattatataatagactttaatgtaaaccattcatgc 105379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 33497147 - 33497241
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||||| ||||||| |||||| || ||||||||||| ||||||||||||||| |||||||||||| |  | ||||||||||||||||||||    
T  33497147 gaggtggagggtaattagatacgtgacatttggtgaatggagttttgtcaggacacgtcagcagatggcgagggaaatgacatttttgcccttaa 33497241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 418
Target Start/End: Complemental strand, 33497585 - 33497491
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||||| ||||||| ||||||||| || |||||||| ||||||||||||||| |||||||||||| |  | ||||||||||||||||||||    
T  33497585 gaggtggagggtaattagatacgtggcattttgtgaatggagttttgtcaggacacgtcagcagatggcgagggaaatgacatttttgcccttaa 33497491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 38599095 - 38599189
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||| | ||||||| || ||||||  |||||| |||| |||||||||||||  | |||||| ||||| ||||||||||||||| |||||||    
T  38599095 gaggtggatggtaattagataagtggcaaatggtgactgggtttttgtcaggacatgtaagcagaaggcaaatgcaatgacatttttacccttaa 38599189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 33497715 - 33497671
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| || ||||||||||    
T  33497715 gcttaaatatgcttttcatccctgtaattatagggcatttgattt 33497671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 24654035 - 24653984
Alignment:
Q  19 gttctactccattccaatcgcaaggttgtggttgctctccaaagttaaaaga 70  Q
    |||||| ||||||||||||| |||| ||||| ||||||||||||||||||||    
T  24654035 gttctattccattccaatcggaaggctgtggctgctctccaaagttaaaaga 24653984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 1232896 - 1232852
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  1232896 gcttaaatatgcatttcatccctgtaattataggccatttgattt 1232852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 34214628 - 34214584
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| || | ||||||||    
T  34214628 gcttaaatatgcttttcatccctgtaattataggccgtttgattt 34214584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 34665771 - 34665815
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| || | ||||||||    
T  34665771 gcttaaatatgcttttcatccctgtaattataggccgtttgattt 34665815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 23641076 - 23641040
Alignment:
Q  204 ttaggcttaatgtaaatttatcatgaatatttatttt 240  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  23641076 ttagggttaatgtaaatttatcatgcatatttatttt 23641040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 25288175 - 25288131
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| ||||||| ||| |||||| |||||||||||||    
T  25288175 gcttaaatatgcatttcatcactgcaattataggtcatttgattt 25288131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 34213765 - 34213809
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||||||||||||||| |||||| || | ||||||||    
T  34213765 gcttaaatatgcttttcatccctgcaattataggccgtttgattt 34213809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 38598965 - 38599009
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| ||||||||||| |||||| || ||||||||||    
T  38598965 gcttaaatatgcatttcatccctgcaattataggccatttgattt 38599009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 21972220 - 21972314
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  |  | ||||||| ||||||||||||    
T  21972220 gaggtggagggtgattagctacgtggcacttggtgactggggttttggcaggacacatcagcagatggggagggaaatgacaattttgcccttaa 21972314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 418
Target Start/End: Complemental strand, 21977986 - 21977892
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  |  | ||||||| ||||||||||||    
T  21977986 gaggtggagggtgattagctacgtggcacttggtgactggggttttggcaggacacatcagcagatggggagggaaatgacaattttgcccttaa 21977892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 22705501 - 22705567
Alignment:
Q  174 tctttatagaacagaacatagcatgtatacttaggcttaatgtaaatttatcatgaatatttatttt 240  Q
    ||||||| | ||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||    
T  22705501 tctttatcgcacagaacatagcatgcatacttcggcttaatgtaaatttatcatgcatatttatttt 22705567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 22705225 - 22705284
Alignment:
Q  19 gttctactccattccaatcgcaaggttgtggttgctctccaaagttaaaagagattccatg 79  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||    
T  22705225 gttctactccattccaattgcaaggctgtggttgctctccaaagtt-aaagagattccatg 22705284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 22705411 - 22705452
Alignment:
Q  84 attttagattgtataataggctttaatgtaaaccattcatgc 125  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22705411 attttagattgtataataggctttaatgtaaaccattcatgc 22705452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 8654108 - 8654152
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  8654108 gcttaaatatgtttttcatccctgtaattataggtcatttgattt 8654152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 20072968 - 20072924
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||    
T  20072968 gcttaaatatgcttttcatccctgtaattataggtcgtttgattt 20072924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 21978112 - 21978072
Alignment:
Q  261 aaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  21978112 aaatatgcttttcatccctgtaattatgggccatttgattt 21978072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 20856933 - 20856977
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| || | ||||||||    
T  20856933 gcttaaatatgcttttcatccctgtaattataggccgtttgattt 20856977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 21972095 - 21972135
Alignment:
Q  261 aaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  21972095 aaatatgtttttcatccctgtaattatgggccatttgattt 21972135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 22870561 - 22870517
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  22870561 gcttaaatatgcatttcatccctgtaattataggccatttgattt 22870517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 287
Target Start/End: Original strand, 39181058 - 39181088
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattat 287  Q
    |||||||||||||||||||||||||||||||    
T  39181058 gcttaaatatgcttttcatccctgtaattat 39181088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 18956368 - 18956409
Alignment:
Q  26 tccattccaatcgcaaggttgtggttgctctccaaagttaaa 67  Q
    ||||||||||||| |||| ||||| |||||||||||||||||    
T  18956368 tccattccaatcggaaggctgtggctgctctccaaagttaaa 18956409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 14744829 - 14744785
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| ||||||||||| ||||||  ||||||||||||    
T  14744829 gcttaaatatgcatttcatccctgcaattatatgtcatttgattt 14744785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 16532898 - 16532938
Alignment:
Q  261 aaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||| || | ||||||||    
T  16532898 aaatatgcttttcatccctgtaattataggccgtttgattt 16532938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 16533724 - 16533680
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||| ||||||| || | ||||||||    
T  16533724 gcttaaatatgcttttcatccctataattataggccgtttgattt 16533680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 20072122 - 20072166
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||||||||||| |||||||||| || | ||||||||    
T  20072122 gcttaaatatgcttttcatctctgtaattataggccgtttgattt 20072166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 20857646 - 20857602
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||| ||||||||| || | ||||||||    
T  20857646 gcttaaatatgcttttcatccatgtaattataggccgtttgattt 20857602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 31107932 - 31107976
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| ||||||||||| |||||| || ||||||||||    
T  31107932 gcttaaatatgcatttcatccctgcaattataggccatttgattt 31107976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 39181895 - 39181851
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||| |||| |||||||||||||| |||| ||||||||    
T  39181895 gcttaaatatgtttttaatccctgtaattataggtcgtttgattt 39181851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 418
Target Start/End: Complemental strand, 55013058 - 55012964
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||||| ||||||| ||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||  | ||||||||||||| ||||||    
T  55013058 gaggtggagggtaattaggtacgtggcatttgatgaatggagttttgtcaagacacatcagcagatggcaagggaaatgacatttttgtccttaa 55012964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 23455788 - 23455744
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  23455788 gcttaaatatgcatttcatccctgtaattataggtcatttgattt 23455744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 23454955 - 23454999
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  23454955 gcttaaatatgcatttcatccctgtaattataggccatttgattt 23454999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 38813555 - 38813599
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| || | ||||||||    
T  38813555 gcttaaatatgcttttcatccctgtaattataggccgtttgattt 38813599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 52815664 - 52815708
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| || | ||||||||    
T  52815664 gcttaaatatgcttttcatccctgtaattataggccgtttgattt 52815708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 56556583 - 56556627
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| || | ||||||||    
T  56556583 gcttaaatatgcttttcatccctgtaattataggccgtttgattt 56556627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 54590146 - 54590188
Alignment:
Q  259 ttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||| ||||||||||| |||||| |||||||||||||    
T  54590146 ttaaatatgcatttcatccctgcaattataggtcatttgattt 54590188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 52816522 - 52816478
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||| ||||||||||||||||||| || | ||||||||    
T  52816522 gcttaaatatgattttcatccctgtaattataggccgtttgattt 52816478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 53477179 - 53477135
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| ||||||| ||| |||||| |||||||||||||    
T  53477179 gcttaaatatgcatttcatctctgcaattataggtcatttgattt 53477135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 54591677 - 54591633
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| ||||||||||| |||||| | |||||||||||    
T  54591677 gcttaaatatgcatttcatccctgcaattatagatcatttgattt 54591633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 55013187 - 55013143
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||| ||||||||| ||  |||||||||    
T  55013187 gcttaaatatgcttttcatccatgtaattataggctatttgattt 55013143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 56557424 - 56557380
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||| ||||||| || | ||||||||    
T  56557424 gcttaaatatgcttttcatccctctaattataggccgtttgattt 56557380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 32619515 - 32619609
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  |  | ||||||| ||||||||||||    
T  32619515 gaggtggagggtgattagctacgtggcacttggtgactggggttttggcaggacacatcagcagatggggagggaaatgacaattttgcccttaa 32619609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 418
Target Start/End: Complemental strand, 32622325 - 32622231
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  |  | ||||||| ||||||||||||    
T  32622325 gaggtggagggtgattagctacgtggcacttggtgactggggttttggcaggacacatcagcagatggggagggaaatgacaattttgcccttaa 32622231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 32619389 - 32619429
Alignment:
Q  261 aaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  32619389 aaatatgcttttcatccctgtaattatgggccatttgattt 32619429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 13295136 - 13295180
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||    
T  13295136 gcttaaatatgcatttcacccctgtaattataggtcatttgattt 13295180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 13295679 - 13295635
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  13295679 gcttaaatatgcatttcatccctgtaattataggccatttgattt 13295635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 32622451 - 32622411
Alignment:
Q  261 aaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  32622451 aaatatgtttttcatccctgtaattatgggccatttgattt 32622411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 46282072 - 46282116
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||| ||||||||||||||||||| |||| ||||||||    
T  46282072 gcttaaatatgtttttcatccctgtaattataggtcgtttgattt 46282116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 51935298 - 51935254
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||| |||||||||  ||||||||||||    
T  51935298 gcttaaatatgcttttcatccatgtaattatatgtcatttgattt 51935254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 2829648 - 2829603
Alignment:
Q  254 aatgcttaaatatgcttttcatccctgtaattatgggtcatttgat 299  Q
    ||||||||||||||| ||||||||||  |||||| |||||||||||    
T  2829648 aatgcttaaatatgcatttcatccctacaattataggtcatttgat 2829603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 6344260 - 6344297
Alignment:
Q  261 aaatatgcttttcatccctgtaattatgggtcatttga 298  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  6344260 aaatatgcatttcatccctgtaattaggggtcatttga 6344297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 46282888 - 46282848
Alignment:
Q  261 aaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||| || | ||||||||    
T  46282888 aaatatgcttttcatccctgtaattataggccgtttgattt 46282848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 49093042 - 49093086
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||| ||||||||||||||||||||||| || | ||||||||    
T  49093042 gcttaaacatgcttttcatccctgtaattataggccgtttgattt 49093086  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 50063043 - 50063003
Alignment:
Q  261 aaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||| || | ||||||||    
T  50063043 aaatatgcttttcatccctgtaattataggccgtttgattt 50063003  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 20101900 - 20101994
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||| | ||||||| |||||||||  ||| ||||||  |||||||||||||| |||||||||||||   | ||||||||||||||||||||    
T  20101900 gaggtggatgctaattagatacgtggcatctggcgaatggttttttgtcaggacacgtcagcagatggcatgggaaatgacatttttgcccttaa 20101994  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 20101771 - 20101815
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| || ||||||||||    
T  20101771 gcttaaatatgcttttcatccctgtaattataggccatttgattt 20101815  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 25624532 - 25624488
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  25624532 gcttaaatatgcatttcatccctgtaattataggtcatttgattt 25624488  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 23206347 - 23206292
Alignment:
Q  354 tggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttt 409  Q
    |||||| |||| |||||||||||||| | |||||| ||||||||||||||||||||    
T  23206347 tggtgactgggtttttgtcaggacacgtaagcagaaggcaattgcaatgacatttt 23206292  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 23677951 - 23677896
Alignment:
Q  354 tggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttt 409  Q
    |||||| |||| |||||||||||||| | |||||| ||||||||||||||||||||    
T  23677951 tggtgactgggtttttgtcaggacacgtaagcagaaggcaattgcaatgacatttt 23677896  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 20982525 - 20982569
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| || | ||||||||    
T  20982525 gcttaaatatgcttttcatccctgtaattataggccgtttgattt 20982569  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 29957818 - 29957862
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||||||| || | ||||||||    
T  29957818 gcttaaatatgcttttcatccctgtaattataggccgtttgattt 29957862  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 287
Target Start/End: Complemental strand, 20983360 - 20983330
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattat 287  Q
    |||||||||||||||||||||||||||||||    
T  20983360 gcttaaatatgcttttcatccctgtaattat 20983330  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 23183729 - 23183823
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||| | ||| ||| ||||||||   |||||| |||| |||| ||||||||| | |||| | || ||||||||||| ||||||||||||||    
T  23183729 gaggtggatggtaagtagttacgtggcggctggtgattgggtttttttcaggacacgtaagcaaaaggaaattgcaatgatatttttgcccttaa 23183823  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 23594986 - 23595080
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||| | ||| ||| ||||||||   |||||| |||| |||| ||||||||| | |||| | || ||||||||||| ||||||||||||||    
T  23594986 gaggtggatggtaagtagttacgtggcggctggtgattgggtttttttcaggacacgtaagcaaaaggaaattgcaatgatatttttgcccttaa 23595080  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 20103243 - 20103199
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||||||| |||||||||||||| || |||| |||||    
T  20103243 gcttaaatatgctttttatccctgtaattataggccattagattt 20103199  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 25623289 - 25623333
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| |||||||||| ||||||| || ||||||||||    
T  25623289 gcttaaatatgcatttcatccctataattataggccatttgattt 25623333  T

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Target: scaffold0182 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 13265 - 13359
Alignment:
Q  324 gaggtggaggataattagctacgtggcacttggtgaatggggttttgtcaggacacatcagcagatggcaattgcaatgacatttttgcccttaa 418  Q
    |||||||||| ||||||| |||||||||  ||| ||||||  |||| ||||||||| |||||||| ||  |  ||||||||||||||||||||||    
T  13265 gaggtggagggtaattagatacgtggcatctggcgaatggttttttttcaggacacgtcagcagaaggggagggcaatgacatttttgcccttaa 13359  T

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Target: scaffold0182; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 14476 - 14432
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||||||||| |||||||||||| || ||||||||||    
T  14476 gcttaaatatgcttttcacccctgtaattataggccatttgattt 14432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 13135 - 13179
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    ||||||||||||||||||||||||||| ||| |  ||||||||||    
T  13135 gcttaaatatgcttttcatccctgtaaatatagaccatttgattt 13179  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 262540 - 262496
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  262540 gcttaaatatgcatttcatccctgtaattataggtcatttgattt 262496  T

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Target: scaffold0009; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 261002 - 261046
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||    
T  261002 gcttaaatatgcatttcatccctgcaattataggtcatttgattt 261046  T

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Target: scaffold1493 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 594 - 638
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| ||||||| ||| |||||| |||||||||||||    
T  594 gcttaaatatgcatttcatcactgcaattataggtcatttgattt 638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 13610 - 13654
Alignment:
Q  257 gcttaaatatgcttttcatccctgtaattatgggtcatttgattt 301  Q
    |||||||||||| ||||||||||| |||||| || ||||||||||    
T  13610 gcttaaatatgcatttcatccctgcaattataggccatttgattt 13654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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