View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15023_low_1 (Length: 728)

Name: NF15023_low_1
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15023_low_1
NF15023_low_1
[»] chr5 (1 HSPs)
chr5 (22-714)||(13448940-13449628)


Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 22 - 714
Target Start/End: Complemental strand, 13449628 - 13448940
Alignment:
Q  22 aataaaatacttcataaattgtaggagtattttaacaaatctaaagcacaatatcaattcaagaaaaatagatacaaagcaactacataccaaagattcg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |    
T  13449628 aataaaatacttcataaattgtaggagtattttaacaaatctaaagcacaatatcaattcaagaaaaatagatacaaaggaactacatactaaagatttg 13449529  T
Q  122 tgagatgtagagggattccttatatttagaatggaaatctcgatttcggatcagcaaatgatataggatcgatgttggaaaatcttgaattagaaattga 221  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||| | ||||||||||    
T  13449528 tgagatgtagagggattccttatattcagaatggaaatctcgacttcggatcagcaaatgatgcaggatcgatgttggaaaatcttggactagaaattga 13449429  T
Q  222 aagaacactcgattattcaaccgataaacttgtgaagactcgatgatcggagcataaacgaagaatctattcgatcgtttggtgaagatgagagggaatg 321  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13449428 aagcacactcgattattcaaccgataaacttgtgaagactcgatgatcggagcataaacgaagaatctattcgatcgtttggtgaagatgagagggaacg 13449329  T
Q  322 aagaaaaatgagtgaaggtcgcggtggtcacggttggtgaaggtcacgatggtgatgaagagtgaatgggtgaaggtcgcgttggtgagggtgagtaaat 421  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13449328 aagaaaaatgggtgaaggtcgcggtggtcacggttggtgaaggtcacggtggtgatgaagagtgaatgggtgaaggtcgcgttggtgagggtgagtgaat 13449229  T
Q  422 gagagtgaccgaaataaaaaagtaaattggtt-tnnnnnnngttttagtgacggtttgaagttgtccataggaaaaaacatcctctactacatttgaaaa 520  Q
    ||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13449228 gagagtgaccgaaataaaaaagtaaattggttaaaaaaaaagttttagtgacggtttgaagttgtccataggaaaaaacatcctctactacatttgaaaa 13449129  T
Q  521 gtataagaatctgatgcagtaaaacaataaaaatgtgatgctaaatatttatttttgaatgttgttgattaattaaactttgatattttgatcttatacg 620  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13449128 gtataagaatctgatgcagt-aaacaataaaaatgtgatgctaaatatttatttttgaatgttgttgattaattaaactttgatattttgatcttataag 13449030  T
Q  621 tagtattttacattattggcagggagaaagatagtagcttaaagtttgtttaattggagagatgataaagagactcaagaaatgattgattttg 714  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13449029 tagtattttacattattggtagggggaaagatagtagcttaaa----gtttaattggagagatgataaagagactcaagaaatgattgattttg 13448940  T

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