View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15023_low_10 (Length: 429)
Name: NF15023_low_10
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15023_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Complemental strand, 50969291 - 50968893
Alignment:
| Q |
10 |
attatactcccaatttgattgattgattccatatcaccttgttttggtaatggttaaaaattaattaaaccaaaccaaccctagtttcttaaccccatgc |
109 |
Q |
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| T |
50969291 |
attatactcccaaattgattgattgattccatatcaccttgttttggtaatggttaaaaattaattaaaccaaaccaaccctagtctcttaaccccatgc |
50969192 |
T |
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| Q |
110 |
atcaaccttgtcaaaaaataaaccccatcgtctcactctctctcggatataatattagggttgagataaacctaacctaatttctaagcttgcagcctca |
209 |
Q |
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| T |
50969191 |
atcaaccttgtcaaaaaataaaccccatcgtctcactctctctcggatataatattagggttgagataaacctaacctaatttctaagcttgcagcctca |
50969092 |
T |
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| Q |
210 |
tatataatatgtaaaaagatatatacctctgctcattgattacctttcccaaagattcaagtttcttcaacgttgacaaatggtgctgtcagtttgtttt |
309 |
Q |
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| T |
50969091 |
tatataatatgtaaaaagatatatacctctgctcattgattacctttcccaaagattcaagtttcttcaacgttgacaaatggtgctgtcagtttgtttt |
50968992 |
T |
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| Q |
310 |
aactaccggtatatgtatattcgttcttttgttgtgnnnnnnnnnnnnngtttacgcctgatccatgctaaatctcatttgtaatctccactttcagga |
408 |
Q |
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| T |
50968991 |
aactaccggtatatgtatattcgttcttttgttgcgttttttattttttgtttacgcctgatccatgctaaatctcatttgtaatctccactttcagga |
50968893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 143 - 321
Target Start/End: Complemental strand, 50973989 - 50973808
Alignment:
| Q |
143 |
cactctctctcggatataatattagggttgaga--taaacctaacctaatttctaagcttgcagcctcatatataatatgtaaaaagatatatacctc-t |
239 |
Q |
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| T |
50973989 |
cactttctctcagatataatattagggttgagaaatagacctaacctagtttctaagcttgccgccgcagatataatatgtgaaaggatagataccttat |
50973890 |
T |
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| Q |
240 |
gctcattgattacctttcccaaagattcaagtttcttcaacgttgacaaatggtgctgtcagtttgttttaactaccggtat |
321 |
Q |
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| T |
50973889 |
gctccttaattacctttcgcaaagattcatatttcttcaacgtagacaaatggtgccgttagtttgttttaactacgggtat |
50973808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 50974072 - 50974009
Alignment:
| Q |
86 |
aaccctagtttcttaaccccatgcatcaaccttgtcaaaaaataaaccccatcgtctcactctct |
150 |
Q |
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| T |
50974072 |
aaccctagtttcttaactccacgcctca-ccttgtcaaaaaataaaccccaccgtctcactctct |
50974009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 50974110 - 50974071
Alignment:
| Q |
27 |
attgattgattccatatcaccttgttttggtaatggttaa |
66 |
Q |
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| T |
50974110 |
attgattaattccgtatcaccttgttttggtaatggttaa |
50974071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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