View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15023_low_11 (Length: 413)
Name: NF15023_low_11
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15023_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 37045922 - 37046222
Alignment:
| Q |
19 |
cacaatgatatcaacatagaaataattttaaggaacattaaacctcccaccaataacaccacnnnnnnnnaaagcttctaatacgcttttagtgcttacc |
118 |
Q |
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| T |
37045922 |
cacaatgatatcaacatagaaataattttaaggaacattaaacctcccaccaataacaccacttttttttaaagcttctaatacgcttctaatgcttacc |
37046021 |
T |
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| Q |
119 |
acgctttcgagccgcggtcaataaagcatagttgaaagtcttgttacaattctctacaccaaaaacacaccatagcatatcataaataaacaaaataaga |
218 |
Q |
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| T |
37046022 |
acgctttcgagctgcggtcaataaaacatagttgaaagtcttgttacaattctctacaccaaaaacacaccatagcatatcataaataaacaaaataaga |
37046121 |
T |
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| Q |
219 |
gtcgtaaacttagtaaagatactaagaaatgatagat---nnnnnnnntaagtaattagcaagaacaatgcatgtatgcatatataattttggcttaaat |
315 |
Q |
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| T |
37046122 |
gtcgtaaacctagtaaagatactaagaaatgatatataaaaagaaaaataagtaattagcaagaacaatgcatgtatgtatatataattttggcttaaat |
37046221 |
T |
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| Q |
316 |
g |
316 |
Q |
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| T |
37046222 |
g |
37046222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 401
Target Start/End: Original strand, 37046276 - 37046368
Alignment:
| Q |
311 |
taaatgatttgttattggtccctccgttaatcaactgtt--nnnnnnngataaaactaacaaagtgtcacttggcccaattatttcatctcac |
401 |
Q |
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||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||||||||||| |||| |
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| T |
37046276 |
taaataatttgttattggtccctccgttaatcaactgttaaaaaaaaaggtaaaactaacagagtgccacttggcccaattatttcatgtcac |
37046368 |
T |
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