View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15023_low_13 (Length: 334)

Name: NF15023_low_13
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15023_low_13
NF15023_low_13
[»] chr3 (5 HSPs)
chr3 (21-322)||(20321021-20321330)
chr3 (21-318)||(34151766-34152071)
chr3 (57-178)||(28983363-28983484)
chr3 (110-199)||(17653840-17653931)
chr3 (238-314)||(28983288-28983368)
[»] chr4 (6 HSPs)
chr4 (21-320)||(30199956-30200264)
chr4 (27-322)||(27365681-27365985)
chr4 (21-225)||(45112488-45112698)
chr4 (279-322)||(45112431-45112474)
chr4 (276-322)||(25960861-25960907)
chr4 (265-321)||(38283004-38283061)
[»] chr8 (5 HSPs)
chr8 (21-321)||(20267199-20267507)
chr8 (21-321)||(21053828-21054136)
chr8 (21-314)||(18630452-18630749)
chr8 (22-314)||(18166899-18167195)
chr8 (22-261)||(15363024-15363268)
[»] chr2 (2 HSPs)
chr2 (22-321)||(12336343-12336651)
chr2 (28-260)||(603759-603996)
[»] chr5 (2 HSPs)
chr5 (21-323)||(7955710-7956021)
chr5 (27-144)||(1593113-1593234)
[»] chr7 (2 HSPs)
chr7 (21-322)||(21867422-21867727)
chr7 (21-314)||(47024268-47024569)
[»] chr1 (2 HSPs)
chr1 (22-322)||(34025361-34025665)
chr1 (23-314)||(34917716-34918015)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 20321021 - 20321330
Alignment:
Q  21 cctgatcaatacctttgttgactcacataatttactttgat---taaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttta 117  Q
    ||||| ||||||||||||||||||||||||||||||||  |   |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20321021 cctgaccaatacctttgttgactcacataatttactttccttgataaaaaaaacatgaaaaatattatttttcatctattgaatgtaaaagggtatttta 20321120  T
Q  118 ataattttgacatttattcttgggattatacattttaaatcaaacatatctgtagtattcc-aggaatttataaagaaagttccaaagaattcaaattgg 216  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||||||||| ||||||||| |||||||||||||| |||||||||||||    
T  20321121 ataattttgacatttattcctgggattatacattttaaaccaaacatatttttagtattcctaggaatttagaaagaaagttccaaggaattcaaattgg 20321220  T
Q  217 taatcaaacacttttataaaatattcctaggaatataattccaagg----tattccggggaaagttattccagggaataatttttgtatccgtgaaacaa 312  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  20321221 taaccaaacacttttttaaaatattcctaggaatataattccaaggaatatattcctgggaaagttattccagggaataatttttgcatccgtgaaacaa 20321320  T
Q  313 acacccccta 322  Q
    ||||||||||    
T  20321321 acacccccta 20321330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 318
Target Start/End: Original strand, 34151766 - 34152071
Alignment:
Q  21 cctgatcaatacctttgttgactcacataatttactttgat---taaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttta 117  Q
    ||||| ||||||||||||||||||||||||||||||||  |   |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34151766 cctgaccaatacctttgttgactcacataatttactttccttgataaaaaaaacatgaaaaatattatttttcatctattgaatgtaaaagggtatttta 34151865  T
Q  118 ataattttgacatttattcttgggattatacattttaaatcaaacatatctgtagtattcc-aggaatttataaagaaagttccaaagaattcaaattgg 216  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||||||||| ||||||||| |||||||||||||| |||||||||||||    
T  34151866 ataattttgacatttattcctgggattatacattttaaaccaaacatatttttagtattcctaggaatttagaaagaaagttccaaggaattcaaattgg 34151965  T
Q  217 taatcaaacacttttataaaatattcctaggaatataattccaagg----tattccggggaaagttattccagggaataatttttgtatccgtgaaacaa 312  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  34151966 taaccaaacacttttttaaaatattcctaggaatataattccaaggaatatattcctgggaaagttattccagggaataatttttgcatccgtgaaacaa 34152065  T
Q  313 acaccc 318  Q
    ||||||    
T  34152066 acaccc 34152071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 57 - 178
Target Start/End: Complemental strand, 28983484 - 28983363
Alignment:
Q  57 ttgattaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtattttaataattttgacatttattcttgggattatacattttaaa 156  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  28983484 ttgattaaaaaaaacatgaaaaatattatttttcatctattgaatgtaaaagggtattttaataattttgacatttattcctaggattatacattttaaa 28983385  T
Q  157 tcaaacatatctgtagtattcc 178  Q
     ||||||||| | |||||||||    
T  28983384 ccaaacatatttttagtattcc 28983363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 17653840 - 17653931
Alignment:
Q  110 gtattttaataattttgacatttattcttgggattatacattttaaa-tcaaacatatctgtagtatt-ccaggaatttataaagaaagttc 199  Q
    ||||||||||||||| |||||||||| ||||||||||| |||||||| |||| ||||| | || |||| ||| ||||||| ||||| |||||    
T  17653840 gtattttaataatttagacatttattattgggattatatattttaaagtcaagcatatttttactattcccatgaatttacaaagacagttc 17653931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 28983368 - 28983288
Alignment:
Q  238 tattcctaggaatataattccaagg----tattccggggaaagttattccagggaataatttttgtatccgtgaaacaaac 314  Q
    ||||||||| ||||||||||||| |    |||||  ||||||||||||||| | ||||||||||| |||||||||||||||    
T  28983368 tattcctagaaatataattccaaagaatatattcgtgggaaagttattccatgaaataatttttgcatccgtgaaacaaac 28983288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 320
Target Start/End: Complemental strand, 30200264 - 30199956
Alignment:
Q  21 cctgatcaatacctttgttgactcacataatttactttg----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttt 116  Q
    ||||| |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30200264 cctgaccaatacctttgttgactcacataatttactttgcttgattaaaaataacatgaaaaatattatttttcatctattgaatgtaaaaggatatttt 30200165  T
Q  117 aataattttgacatttattcttgggattatacattttaaatcaaacatatctgtagtatt-ccaggaatttataaagaaagttccaaagaattcaaattg 215  Q
    |||||||||||||||||||| || |||||||||||||||| ||||||||| | ||||||| ||||||||||| ||||||||||| || ||||||||||||    
T  30200164 aataattttgacatttattcctgagattatacattttaaaccaaacatatttttagtattcccaggaatttagaaagaaagttctaaggaattcaaattg 30200065  T
Q  216 gtaatcaaacacttttataaaatattcctaggaatataattccaagg----tattccggggaaagttattccagggaataatttttgtatccgtgaaaca 311  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  30200064 gtaaccaaacacttttttaaaatattcctaggaatataattccaaggaatatattcctgggaaagttattccagggaataatttttgcatccgtgaaaca 30199965  T
Q  312 aacaccccc 320  Q
    ||| |||||    
T  30199964 aacgccccc 30199956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 27365985 - 27365681
Alignment:
Q  27 caatacctttgttgactcacataatttactttg----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtattttaataat 122  Q
    ||||||||||||| |||||||||||||||||||    ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27365985 caatacctttgttaactcacataatttactttgcttgattgaaaataacataaaaaatattatttttcatctattgaatgtaaaagggtattttaataat 27365886  T
Q  123 tttgacatttattcttgggattatacattttaaatcaaacatatctgtagtatt-ccaggaatttataaagaaagttccaaagaattcaaattggtaatc 221  Q
    |||||||||||||| || |||||||||||||||| ||||||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||||||| |    
T  27365885 tttgacatttattcctgagattatacattttaaaccaaacatatttttagtattcccaggaatttagaaagaaagttccaaagaattcaaattggtaacc 27365786  T
Q  222 aaacacttttataaaatattcctaggaatataattccaagg----tattccggggaaagttattccagggaataatttttgtatccgtgaaacaaacacc 317  Q
    |||||||||| ||||||||||||||||||||||||||||||    |||||| || ||||||||||||| |||||||||||| ||||||||||||||| ||    
T  27365785 aaacacttttttaaaatattcctaggaatataattccaaggaatatattcctggaaaagttattccagagaataatttttgcatccgtgaaacaaacgcc 27365686  T
Q  318 cccta 322  Q
    |||||    
T  27365685 cccta 27365681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 45112698 - 45112488
Alignment:
Q  21 cctgatcaatacctttgttgactcacataatttactttg-----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtattt 115  Q
    ||||| |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45112698 cctgaccaatacctttgttgactcacataatttactttgcttagattaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtattt 45112599  T
Q  116 taataattttgacatttattcttgggattatacattttaaatcaaacatatctgtagtattc-caggaatttataaagaaagttccaaagaattcaaatt 214  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||||||||  || |||||| |||||||||||||| |||||||||||    
T  45112598 taataattttgacatttattcctgggattatacattttaaaccaaacatatttttagtattcttagtaatttagaaagaaagttccaaggaattcaaatt 45112499  T
Q  215 ggtaatcaaac 225  Q
    ||||| |||||    
T  45112498 ggtaaccaaac 45112488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 45112474 - 45112431
Alignment:
Q  279 attccagggaataatttttgtatccgtgaaacaaacacccccta 322  Q
    |||||||||||||||||||| ||||||||||||||| |||||||    
T  45112474 attccagggaataatttttgcatccgtgaaacaaacgcccccta 45112431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 322
Target Start/End: Original strand, 25960861 - 25960907
Alignment:
Q  276 gttattccagggaataatttttgtatccgtgaaacaaacacccccta 322  Q
    |||||||| ||||||||||||||| |||||||| |||||||||||||    
T  25960861 gttattcctgggaataatttttgtgtccgtgaaccaaacacccccta 25960907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 38283004 - 38283061
Alignment:
Q  265 ttccggggaaagtta-ttccagggaataatttttgtatccgtgaaacaaacaccccct 321  Q
    |||| |||||||||| |||||||||  |||||||| ||||| ||||||||||||||||    
T  38283004 ttcctgggaaagttaattccagggagaaatttttgcatccgggaaacaaacaccccct 38283061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 321
Target Start/End: Original strand, 20267199 - 20267507
Alignment:
Q  21 cctgatcaatacctttgttgactcacataatttactttg----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttt 116  Q
    ||||| |||||||||||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20267199 cctgaccaatacctttgttgactcacataatttactttgcttgattgaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttt 20267298  T
Q  117 aataattttgacatttattcttgggattatacattttaaatcaaacatatctgtagtatt-ccaggaatttataaagaaagttccaaagaattcaaattg 215  Q
    |||||||||||||||||||  |||||||||||||||| || ||||||||| | ||||||| ||||||||||| |||||||||||||| ||||||||||||    
T  20267299 aataattttgacatttatttctgggattatacatttt-aaccaaacatatttttagtattcccaggaatttagaaagaaagttccaaggaattcaaattg 20267397  T
Q  216 gtaatcaaacacttttataaaatattcctaggaatataattccaagg----tattccggggaaagttattccagggaataatttttgtatccgtgaaaca 311  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  20267398 gtaaccaaacacttttttaaaatattcctaggaatataattccaaggaatatattcctgggaaagttattccagggaataatttttgcatccgtgaaaca 20267497  T
Q  312 aacaccccct 321  Q
    ||| ||||||    
T  20267498 aacgccccct 20267507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 321
Target Start/End: Original strand, 21053828 - 21054136
Alignment:
Q  21 cctgatcaatacctttgttgactcacataatttactttg----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttt 116  Q
    ||||| |||||||||||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21053828 cctgaccaatacctttgttgactcacataatttactttgcttgattgaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttt 21053927  T
Q  117 aataattttgacatttattcttgggattatacattttaaatcaaacatatctgtagtatt-ccaggaatttataaagaaagttccaaagaattcaaattg 215  Q
    |||||||||||||||||||  |||||||||||||||| || ||||||||| | ||||||| ||||||||||| |||||||||||||| ||||||||||||    
T  21053928 aataattttgacatttatttctgggattatacatttt-aaccaaacatatttttagtattcccaggaatttagaaagaaagttccaaggaattcaaattg 21054026  T
Q  216 gtaatcaaacacttttataaaatattcctaggaatataattccaagg----tattccggggaaagttattccagggaataatttttgtatccgtgaaaca 311  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  21054027 gtaaccaaacacttttttaaaatattcctaggaatataattccaaggaatatattcctgggaaagttattccagggaataatttttgcatccgtgaaaca 21054126  T
Q  312 aacaccccct 321  Q
    ||| ||||||    
T  21054127 aacgccccct 21054136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 314
Target Start/End: Original strand, 18630452 - 18630749
Alignment:
Q  21 cctgatcaatacctttgttgactcacataatttactttg----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttt 116  Q
    ||||| |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18630452 cctgaccaatacctttgttgactcacataatttactttgcttgattaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttt 18630551  T
Q  117 aataattttgacatttattcttgggattatacattttaaatcaaacatatctgtagtatt-ccaggaatttataaagaaagttccaaagaattcaaattg 215  Q
    |||||||||||||||||||| ||||||||||||||||     |||||||| | ||||||| ||||||||||| |||||||||||||| ||||||||||||    
T  18630552 aataattttgacatttattcctgggattatacatttt-----aaacatatttctagtattcccaggaatttagaaagaaagttccaaggaattcaaattg 18630646  T
Q  216 gtaatcaaacacttttataaaatattcctaggaatataattccaagg----tattccggggaaagttattccagggaataatttttgtatccgtgaaaca 311  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||    |||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  18630647 gtaaccaaacacttttttaaaatattcctaggaatataattccaaggaatatattcctgggaatgttattccagggaataatttttgtatccatgaaaca 18630746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 18166899 - 18167195
Alignment:
Q  22 ctgatcaatacctttgttgactcacataatttactttg----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttta 117  Q
    |||| |||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18166899 ctgaccaatacctttgttgactcacataatttactttgcttgattaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttta 18166998  T
Q  118 ataattttgacatttattcttgggattatacattttaaatcaaacatatctgtagtatt-ccaggaatttataaagaaagttccaaagaattcaaattgg 216  Q
    ||||||||||||||||||| ||||||||||||||||     |||||||| | ||||||| ||||||||||| |||||||||||||| |||||||||||||    
T  18166999 ataattttgacatttattcctgggattatacatttt-----aaacatatttctagtattcccaggaatttagaaagaaagttccaaggaattcaaattgg 18167093  T
Q  217 taatcaaacacttttataaaatattcctaggaatataattccaagg----tattccggggaaagttattccagggaataatttttgtatccgtgaaacaa 312  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||    |||||| ||||| |||||||||||||||||||||||||||| ||||||||    
T  18167094 taaccaaacacttttttaaaatattcctaggaatataattccaaggaatatattcctgggaatgttattccagggaataatttttgtatccatgaaacaa 18167193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 15363024 - 15363268
Alignment:
Q  22 ctgatcaatacctttgttgactcacataatttactttg----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttta 117  Q
    |||| |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15363024 ctgaccaatacctttgttgactcacataatttactttgcttgattaaaaataacatgaaaaatattatttttcatctatttaatgtaaaagggtatttta 15363123  T
Q  118 ataattttgacatttattcttgggattatacattttaaatcaaacatatctgtagtatt-ccaggaatttataaagaaagttccaaagaattcaaattgg 216  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||||||| ||||||||||| |||||||||||||| |||||||||||||    
T  15363124 ataattttgacatttattcctgggattatacattttaaaccaaacatatttttagtattcccaggaatttagaaagaaagttccaaggaattcaaattgg 15363223  T
Q  217 taatcaaacacttttataaaatattcctaggaatataattccaag 261  Q
    ||| ||||||||||| |||||||||||||||||||||||||||||    
T  15363224 taaccaaacacttttttaaaatattcctaggaatataattccaag 15363268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 22 - 321
Target Start/End: Original strand, 12336343 - 12336651
Alignment:
Q  22 ctgatcaatacctttgttgactcacataatttactttg----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttta 117  Q
    |||| |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12336343 ctgaccaatacctttgttgactcacataatttactttgcttgattaaaaataacatgaaaaatattatttttcatctatttaatgtaaaagggtatttta 12336442  T
Q  118 ataattttgacatttattcttgggattatacattttaaatcaaacatatctgtagtatt-ccaggaatttataaagaaagttccaaagaattcaaattgg 216  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||||||| ||||||||||| ||||||||||||||  ||||||||||||    
T  12336443 ataattttgacatttattcctgggattatacattttaaaccaaacatatttttagtattcccaggaatttagaaagaaagttccaagaaattcaaattgg 12336542  T
Q  217 taatcaaacacttttataaaatattcctaggaatataattccaag----gtattccggggaaagttattccagggaataatttttgtatccgtgaaacaa 312  Q
    ||| ||||||||||| |||||||||||||||||||||||||||||     |||||| |||||| |||||||||||||||||||||| |||||||||||||    
T  12336543 taaccaaacacttttttaaaatattcctaggaatataattccaagaaatatattcctgggaaaattattccagggaataatttttgcatccgtgaaacaa 12336642  T
Q  313 acaccccct 321  Q
    || ||||||    
T  12336643 acgccccct 12336651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 28 - 260
Target Start/End: Complemental strand, 603996 - 603759
Alignment:
Q  28 aatacctttgttgactcacataatttactttg----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtattttaataatt 123  Q
    ||||||||||||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  603996 aatacctttgttgactcgcataatttactttgcttgattaaaaataacatgaaaaatattatttttcatctattgaatgtcaaagggtatattaataatt 603897  T
Q  124 ttgacatttattcttgggattatacattttaaatcaaacatatctgtagtatt-ccaggaatttataaagaaagttccaaagaattcaaattggtaatca 222  Q
    ||||||||||||| |||||||||||||||||||| |||||||| | ||||||| |||  |||||| ||||||||||||||||||||||||||||||| ||    
T  603896 ttgacatttattcctgggattatacattttaaataaaacatatttttagtattcccaaaaatttagaaagaaagttccaaagaattcaaattggtaacca 603797  T
Q  223 aacacttttataaaatattcctaggaatataattccaa 260  Q
    |||||||||  ||||||||||||  |||||||||||||    
T  603796 aacactttttaaaaatattcctaaaaatataattccaa 603759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 323
Target Start/End: Original strand, 7955710 - 7956021
Alignment:
Q  21 cctgatcaatacctttgttgactcacataatttactttg----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttt 116  Q
    ||||| |||||||||||||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  7955710 cctgaccaatacctttgttgactcgcataatttactttgcttgattaaaaataacatgaaaaatattatttttcatcaatttaatgtaaaagggtatttt 7955809  T
Q  117 aataattttgacatttattcttgggattatacattttaaatcaaacatatctgtagtatt-ccaggaatttataaagaaagttccaaagaattcaaattg 215  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||||||| ||||||||||| |||||||||||||| ||||||||||||    
T  7955810 aataattttgacatttattcctgggattatacattttaaaccaaacatatttttagtattcccaggaatttagaaagaaagttccaaggaattcaaattg 7955909  T
Q  216 gtaatcaaacacttttataaaatattcctaggaatataattccaagg----tattccggggaaagttattccagggaataatttttgtatccgtgaaaca 311  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||    |||||| |||||| |||||||||||||||||||||| ||| ||||||||    
T  7955910 gtaaccaaacacttttttaaaatattcctaggaatataattccaaggaatatattcctgggaaaattattccagggaataatttttgcatctgtgaaaca 7956009  T
Q  312 aacaccccctat 323  Q
    |||  |||||||    
T  7956010 aacggcccctat 7956021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 1593113 - 1593234
Alignment:
Q  27 caatacctttgttgactcacataatttactttg----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtattttaataat 122  Q
    |||||||||||||||||||||||||||||||||    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1593113 caatacctttgttgactcacataatttactttgcttgattaaaaataacgtgaaaaatattatttttgatctattgaatgtaaaagggtattttaataat 1593212  T
Q  123 tttgacatttattcttgggatt 144  Q
    |||||||||||||| |||||||    
T  1593213 tttgacatttattcctgggatt 1593234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 21867727 - 21867422
Alignment:
Q  21 cctgatcaatacctttgttgactcacataatttactttg----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttt 116  Q
    ||||| |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21867727 cctgaccaatacctttgttgactcacataatttactttgcttgattaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttt 21867628  T
Q  117 aataattttgacatttattcttgggattatacattttaaatcaaacatatctgtagta-ttccaggaatttataaagaaagttccaaagaattcaaattg 215  Q
    |||||||||||||||||||| ||||||||||||||||     |||||||| | ||||| ||||||||||||| |||||||||||||| ||||||||||||    
T  21867627 aataattttgacatttattcctgggattatacatttt-----aaacatatttttagtatttccaggaatttagaaagaaagttccaaggaattcaaattg 21867533  T
Q  216 gtaatcaaacacttttataaaatattcctaggaatataattccaagg----tattccggggaaagttattccagggaataatttttgtatccgtgaaaca 311  Q
    |||| |||||||||||  ||||||||||||| |||||||||||||||    |||||| ||||| |||||||||| |||||||||||||||||||||||||    
T  21867532 gtaaccaaacactttttaaaaatattcctagaaatataattccaaggaatatattcctgggaatgttattccagagaataatttttgtatccgtgaaaca 21867433  T
Q  312 aacacccccta 322  Q
    ||| |||||||    
T  21867432 aacgcccccta 21867422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 21 - 314
Target Start/End: Original strand, 47024268 - 47024569
Alignment:
Q  21 cctgatcaatacctttgttgactcacataatttactttg----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttt 116  Q
    ||||| |||||| ||||||||||||||||||||||||||    |||||||| |||||||||| || ||||||||||||||||||||||||||||||||||    
T  47024268 cctgaccaatacttttgttgactcacataatttactttgctttattaaaaaaaacatgaaaa-tactatttttcatctattgaatgtaaaagggtatttt 47024366  T
Q  117 aataattttgacatttattcttgggattatacattttaaatcaaacatatctgtagtatt-ccaggaatttataaagaaagttccaaagaattcaaattg 215  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||||||| ||| ||||||| ||||||||||||||  |||||||||||    
T  47024367 aataattttgacatttattcctgggattatacattttaaaccaaacatatttttagtattcccaagaatttagaaagaaagttccaagaaattcaaattg 47024466  T
Q  216 gtaatcaaacacttttataaaatattcctaggaatataattccaagg----tattccggggaaagttattccagggaataatttttgtatccgtgaaaca 311  Q
    |||| ||||||||||| |||||||||| ||| |||||||||||||||    |||||| |  ||||||||| |||| ||||||||||| ||||||||||||    
T  47024467 gtaaccaaacacttttttaaaatattcatagaaatataattccaaggaatatattcctgaaaaagttatttcaggaaataatttttgcatccgtgaaaca 47024566  T
Q  312 aac 314  Q
    |||    
T  47024567 aac 47024569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 322
Target Start/End: Original strand, 34025361 - 34025665
Alignment:
Q  22 ctgatcaatacctttgttgactcacataatttactttg----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttta 117  Q
    |||| |||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34025361 ctgaccaatacctttgttgactcacataatttactttgcttgattaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtatttta 34025460  T
Q  118 ataattttgacatttattcttgggattatacattttaaatcaaacatatctgtagtatt-ccaggaatttataaagaaagttccaaagaattcaaattgg 216  Q
    ||||||||||||||||||| ||||||||||||||||     |||||||| | ||||||| ||| ||||||| |||||||||||||| ||||||||||||     
T  34025461 ataattttgacatttattcctgggattatacatttt-----aaacatatttttagtattaccaagaatttagaaagaaagttccaaggaattcaaattga 34025555  T
Q  217 taatcaaacacttttataaaatattcctaggaatataattccaagg----tattccggggaaagttattccagggaataatttttgtatccgtgaaacaa 312  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||    |||||| ||||| ||||||| || ||||||||||||||||||||||||||    
T  34025556 taaccaaacacttttttaaaatattcctaggaatataattccaaggaatatattcctgggaatgttattctagagaataatttttgtatccgtgaaacaa 34025655  T
Q  313 acacccccta 322  Q
    || |||||||    
T  34025656 acgcccccta 34025665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 23 - 314
Target Start/End: Original strand, 34917716 - 34918015
Alignment:
Q  23 tgatcaatacctttgttgactcacataatttactttg----attaaaaataacatgaaaaatattatttttcatctattgaatgtaaaagggtattttaa 118  Q
    |||||||||||||||||||||||||||||||||||||    ||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  34917716 tgatcaatacctttgttgactcacataatttactttgcttgattgaaaataacataaaaaatattatttttcatctattgaatgtaaaaaggtattttaa 34917815  T
Q  119 taattttgacatttattcttgggattatacattttaaatcaaacatatctgtagtatt-ccaggaatttataaagaaagttccaaagaattcaaattggt 217  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||||| | || |||| ||||||||||| |||||||||||||| ||||||||||||||    
T  34917816 taattttgacatttatttctgggattatacattttaaaccaaacatat-tttaatattcccaggaatttagaaagaaagttccaaggaattcaaattggt 34917914  T
Q  218 aatcaaacacttttataaaatattcctaggaatataattccaagg----tattccggggaaagttattccagggaataatttttgtatccgtgaaacaaa 313  Q
    || ||||||||||| ||||||||||||| |||||||||||||| |    |||||| || |||||||||||| ||||||||||||| ||||||||||||||    
T  34917915 aaccaaacacttttttaaaatattcctatgaatataattccaatgaatatattcctggaaaagttattccaaggaataatttttgcatccgtgaaacaaa 34918014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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