View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15023_low_2 (Length: 676)
Name: NF15023_low_2
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15023_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 18 - 662
Target Start/End: Complemental strand, 19981485 - 19980834
Alignment:
| Q |
18 |
accaaagtctcaatcttttcatctctatgatgataactatatacttttctttcattcactatcacaattcattattattcttattcaaagtatagtacaa |
117 |
Q |
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| T |
19981485 |
accaaagtctcaatcttttcatctctatgatgataactatatacttttctttcattcactatcacaattcattattattcttattcaaagtatagtacaa |
19981386 |
T |
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| Q |
118 |
tttctctctctttcttcaacatgcttcttattgttattg------ttacttgttagtttcagattctgtttttctgttataattgcttgttcaattcaaa |
211 |
Q |
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| T |
19981385 |
tttctctctctttcttcaacatgcttgttattgttattgctattgttacttgttagtttcagattctgtttttctgttacaattgtttgttcaattcaaa |
19981286 |
T |
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| Q |
212 |
ttctttggttagaacaagnnnnnnnngttttttgttaaccatggctgcaaagaaagccattgaaacattctccaaaagcttgatagaagaagtacacaaa |
311 |
Q |
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| T |
19981285 |
ttctttggttagaacaagaaaaaaaagttttttgttaaccatggctgcaaagaaagctattgaaacattctccaaaagcttgatagaagaagtacacaaa |
19981186 |
T |
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| Q |
312 |
tggggttgtttcaaacaaactggtgtgagtttaagatacatgatggattttggttctaaaccaacttccaagaatttgttgatttctgcacagtttcttc |
411 |
Q |
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| T |
19981185 |
tggggttgtttcaaacaaactggtgtgagtttaagatacatgatggattttggttctaaaccaacttccaagaatttgttgatttctgcacagtttcttc |
19981086 |
T |
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| Q |
412 |
ataaggaacttgccattagaattgctagaagagctgttgagcttgaaaggcttccttgtgatttgtcacaaaaacctgctgttttgaaggtacccttttg |
511 |
Q |
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| T |
19981085 |
ataaggaacttgccattagaattgctagaagagctgttgagcttgaaaggcttccttgtgatttgtcacaaaaacctgctgttttgaaggtacccttttg |
19980986 |
T |
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| Q |
512 |
att-ttttatggaaagaaataatgggttgttattagttttctatttgtgttgatttttattataagtatagttatgattctttgatcttatctgtttatg |
610 |
Q |
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| T |
19980985 |
attgttttatggaaagaaataatgggttgtttttagttttctatttgtgttgatttttattataagtatagttatgattctttgatcttatctgtttatg |
19980886 |
T |
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| Q |
611 |
ttgaaatgagttttggatgtttcttgcaagtttcaattacttgttttgtagt |
662 |
Q |
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| T |
19980885 |
ttgaaatgagttttggttgtttcttgcaagtttcaattacttgttttgtagt |
19980834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 298 - 491
Target Start/End: Complemental strand, 8046377 - 8046184
Alignment:
| Q |
298 |
aagaagtacacaaatggggttgtttcaaacaaactggtgtgagtttaagatacatgatggattttggttctaaaccaacttccaagaatttgttgatttc |
397 |
Q |
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||||||| || |||||||||||||| || ||||||||||||||||| || || |||||||| |||||||| |||| ||| ||||||||||||||||| |
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| T |
8046377 |
aagaagtgcataaatggggttgtttgaagcaaactggtgtgagtttgaggtatatgatggaatttggttcacaacctactgataagaatttgttgatttc |
8046278 |
T |
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| Q |
398 |
tgcacagtttcttcataaggaacttgccattagaattgctagaagagctgttgagcttgaaaggcttccttgtgatttgtcacaaaaacctgct |
491 |
Q |
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| T |
8046277 |
tgcacagtttcttcaaaaggaacttgctattagaattgctagacgagctattgaacttgagagtcttccttatggtttgtcaaaaaaacctgct |
8046184 |
T |
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