View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15023_low_23 (Length: 271)

Name: NF15023_low_23
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15023_low_23
NF15023_low_23
[»] chr3 (5 HSPs)
chr3 (182-253)||(30470327-30470398)
chr3 (130-186)||(23940384-23940440)
chr3 (130-186)||(15332822-15332878)
chr3 (130-186)||(21083177-21083233)
chr3 (130-186)||(26406023-26406079)
[»] chr1 (2 HSPs)
chr1 (182-253)||(45275931-45276002)
chr1 (188-253)||(35320758-35320823)
[»] chr8 (1 HSPs)
chr8 (130-186)||(33700089-33700145)
[»] chr6 (2 HSPs)
chr6 (188-253)||(13998855-13998920)
chr6 (130-186)||(10298590-10298646)
[»] chr5 (1 HSPs)
chr5 (188-253)||(33306621-33306686)
[»] chr7 (2 HSPs)
chr7 (130-186)||(3785710-3785766)
chr7 (130-186)||(24423612-24423668)
[»] chr4 (1 HSPs)
chr4 (130-186)||(4455483-4455539)
[»] chr2 (1 HSPs)
chr2 (130-186)||(11931855-11931911)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 30470398 - 30470327
Alignment:
Q  182 attaactcttggagcagcaggtgtttatcgcaaccagggagggagattcttatcaaatcagtactgcaatct 253  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  30470398 attaactcttggagcagcaggtgtttatcgcaagcagggagggagattcttatcaaatctgtactgcaatct 30470327  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 23940384 - 23940440
Alignment:
Q  130 aaatatatgtcgtagtgaaccactacacacatacaaatacacaactttgaccattaa 186  Q
    |||||||| ||| ||| ||||||||||||||||| |||| |||||||||||||||||    
T  23940384 aaatatatatcgcagtcaaccactacacacatactaatatacaactttgaccattaa 23940440  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 15332822 - 15332878
Alignment:
Q  130 aaatatatgtcgtagtgaaccactacacacatacaaatacacaactttgaccattaa 186  Q
    ||||| |||||  ||| ||||||||||||||| | ||||||||||||||||||||||    
T  15332822 aaatacatgtcccagtcaaccactacacacatgccaatacacaactttgaccattaa 15332878  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 21083233 - 21083177
Alignment:
Q  130 aaatatatgtcgtagtgaaccactacacacatacaaatacacaactttgaccattaa 186  Q
    ||||| ||||| |||| ||||||  ||||||||| ||||||||||||||||||||||    
T  21083233 aaatacatgtcatagtcaaccacgtcacacataccaatacacaactttgaccattaa 21083177  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 26406023 - 26406079
Alignment:
Q  130 aaatatatgtcgtagtgaaccactacacacatacaaatacacaactttgaccattaa 186  Q
    ||||| |||||| ||| ||||||| |||| || | ||||||||||||||||||||||    
T  26406023 aaatacatgtcgcagtcaaccactgcacatatgctaatacacaactttgaccattaa 26406079  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 45276002 - 45275931
Alignment:
Q  182 attaactcttggagcagcaggtgtttatcgcaaccagggagggagattcttatcaaatcagtactgcaatct 253  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  45276002 attaactcttggagcagcaggtgtttatcgcaagcagggagggagattcttatcaaatctgtactgcaatct 45275931  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 35320758 - 35320823
Alignment:
Q  188 tcttggagcagcaggtgtttatcgcaaccagggagggagattcttatcaaatcagtactgcaatct 253  Q
    |||||||| ||||| ||| | |||||| |||| || |||||||||||||||||||| || ||||||    
T  35320758 tcttggagtagcagatgtctgtcgcaagcaggaagagagattcttatcaaatcagtcctccaatct 35320823  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 33700089 - 33700145
Alignment:
Q  130 aaatatatgtcgtagtgaaccactacacacatacaaatacacaactttgaccattaa 186  Q
    ||||| |||||| ||| ||||||| ||||||| | ||||||||||||||||||||||    
T  33700089 aaatacatgtcgcagtcaaccactgcacacatgccaatacacaactttgaccattaa 33700145  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 13998920 - 13998855
Alignment:
Q  188 tcttggagcagcaggtgtttatcgcaaccagggagggagattcttatcaaatcagtactgcaatct 253  Q
    |||||||| ||||  ||||| |||||| |||| || |||||||||||||||||||| || ||||||    
T  13998920 tcttggagtagcatatgtttgtcgcaagcaggaagagagattcttatcaaatcagtcctccaatct 13998855  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 10298590 - 10298646
Alignment:
Q  130 aaatatatgtcgtagtgaaccactacacacatacaaatacacaactttgaccattaa 186  Q
    ||||| |||||| ||| |||||||  |||||| | ||||||||||||||||||||||    
T  10298590 aaatacatgtcgcagtcaaccactgtacacatgccaatacacaactttgaccattaa 10298646  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 33306686 - 33306621
Alignment:
Q  188 tcttggagcagcaggtgtttatcgcaaccagggagggagattcttatcaaatcagtactgcaatct 253  Q
    |||||||| ||||| ||| | |||||| |||| || |||||||||||||||||||| || ||||||    
T  33306686 tcttggagtagcagatgtctgtcgcaagcaggaagagagattcttatcaaatcagtcctccaatct 33306621  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 3785766 - 3785710
Alignment:
Q  130 aaatatatgtcgtagtgaaccactacacacatacaaatacacaactttgaccattaa 186  Q
    ||||| |||||| ||| ||||| | ||| ||||||||||||||||||||| ||||||    
T  3785766 aaatacatgtcgcagtcaaccattgcactcatacaaatacacaactttgatcattaa 3785710  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 24423612 - 24423668
Alignment:
Q  130 aaatatatgtcgtagtgaaccactacacacatacaaatacacaactttgaccattaa 186  Q
    ||||| |||||| ||| ||||||| ||||||| | |||||| |||||||||||||||    
T  24423612 aaatacatgtcgcagtcaaccactgcacacattccaatacataactttgaccattaa 24423668  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 4455539 - 4455483
Alignment:
Q  130 aaatatatgtcgtagtgaaccactacacacatacaaatacacaactttgaccattaa 186  Q
    ||||| |||||| ||| ||||||| || |||| | ||||||||||||||||||||||    
T  4455539 aaatacatgtcgcagtcaaccactgcagacatgctaatacacaactttgaccattaa 4455483  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 11931911 - 11931855
Alignment:
Q  130 aaatatatgtcgtagtgaaccactacacacatacaaatacacaactttgaccattaa 186  Q
    ||||| |||||| ||| ||||||| || |||| | ||||||||||||||||||||||    
T  11931911 aaatacatgtcgcagtcaaccactgcaaacatgccaatacacaactttgaccattaa 11931855  T

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